Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00162 ATGGGAGAGGTGCCGCAAATAGTTGAGATGAAGAAGGACGTTAGCAATACCATTGGAAAGTCTGAAAACGAAGCAAGGCTTGCCATTTTGGAACTAGCCCACATGATGAGTGTTCCTATGTCCCTCATTGCTGTGCTTAACCTTAAGGTCCCCGAGGCCATAATGCAAGATGGTTCCAACACTCCCCTATCCGCCGCCCAAATTCTCGCTCGCATTCGTCCCCACGGCGGCGCCGACGCCGAGAACCTCCAGCGCCTCCTCCGCTTGCTGACTAGCTATGACATCTTTGATGAGCACTTAAGCTGCAGTGGCCAAAGGAAATACTCACTCACTCACATCGGAAAATCTCTCGCCGACGATGACCAAGGTCTATCCTATGCATATTATATGCTCCAGCACCATGAGGATGCATTGATGCGAGCTTGGCCATTGGTGGGAGAAGCAGTGGAAGATCCAAGTGTGGAACCATTTGTGAAGGCGAACGGAGTGTCAGCGATAGAATACCACACGAAGAAGCCAGATGATAATGTTATGCCCTCAATTTATAAGTCCTTCGCTGGAATGTGTGTACCCTTCATGATGGAAATGCTTCAAGTCTACGATGGCTTTAAAGGAGTGGAAACACTAGTTGATGTTGGTGGCAATTCTGGTATCACCCTTCGTATGATCATGGACAATTACCCTAATGTACGCAAGGGCATCAACTTTGACCTACCTGACATGGTGGCTCGTGCACCTAACATCCCAGTGGGTATTTTTAGGATGGACAGACGAGGAATCTAA 783 0.4853 MGEVPQIVEMKKDVSNTIGKSENEARLAILELAHMMSVPMSLIAVLNLKVPEAIMQDGSNTPLSAAQILARIRPHGGADAENLQRLLRLLTSYDIFDEHLSCSGQRKYSLTHIGKSLADDDQGLSYAYYMLQHHEDALMRAWPLVGEAVEDPSVEPFVKANGVSAIEYHTKKPDDNVMPSIYKSFAGMCVPFMMEMLQVYDGFKGVETLVDVGGNSGITLRMIMDNYPNVRKGINFDLPDMVARAPNIPVGIFRMDRRGI 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00162 260 Gene3D - 9 117 IPR036388 -
Cca03g00162 260 PANTHER O-METHYLTRANSFERASE 18 248 IPR016461 GO:0008168
Cca03g00162 260 Gene3D Vaccinia Virus protein VP39 118 257 IPR029063 -
Cca03g00162 260 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 30 260 IPR016461 GO:0008168
Cca03g00162 260 SUPERFAMILY "Winged helix" DNA-binding domain 21 120 IPR036390 -
Cca03g00162 260 PANTHER OS02G0823400 PROTEIN 18 248 - -
Cca03g00162 260 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 248 IPR029063 -
Cca03g00162 260 Pfam O-methyltransferase domain 145 247 IPR001077 GO:0008171
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00162 Cca-Chr3 2501026 2520052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00162 16 249 Monolignol Biosynthesis Gene Families AT3G53140 56.723 3.46e-88 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00162 - - ccaj:109819366 398.667