Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00157 ATGGATTCCAATTCCAACCAAAACACCACATTATTCACAAATGTTGTTAACAACACTGGGAACATGGGAAcatatgatcaacacaacaacaccatcatcctccatgatcaccatcatgatcaCCGCCAAATTCCAATGGGTGTTAGTGTTAACGTTAACTACCCCCACCACATGCAACCCTCATCCTCGTCCAACGTGGCACCCTCTTCTTCAAGCAACAACTTTCTGAGCGACGTGTTAGGGATCCATTTCGAAGAGGAGGAAGAGGGTGAAGAAGAGTTAGGAGCCATGAAGGAAATGATGTACAAAATGGCAGCGATGCAACCCGTCGACATAGACCCCGCAAGCGTGAGAAAACCAAAGAGACGAAACGTGCGCATAAGCGAGGACCCTCAGAGCGTGGCTGCGAGACACAGGCGCGAGAGGATCAGCGAGAAGATCCGCATCCTCCAAAGACTCGTCCCTGGTGGAACCAAAATGGACACTGCTTCCATGCTCGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGAGGCAAATTAGGTTGCTCCAATCACCACCGCCACCACACTCACAACTCTTACCAGTACCACCTTCAATTAATACTAGTGATTGCCCTTTTGCACCAATTTTATTCAACGATTCCTCCACCAGAGGCCTTGGCAATGACGCTGATTATTCGATCCGGTTTGAGCAATCATGA 702 0.4487 MDSNSNQNTTLFTNVVNNTGNMGTYDQHNNTIILHDHHHDHRQIPMGVSVNVNYPHHMQPSSSSNVAPSSSSNNFLSDVLGIHFEEEEEGEEELGAMKEMMYKMAAMQPVDIDPASVRKPKRRNVRISEDPQSVAARHRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSPPPPHSQLLPVPPSINTSDCPFAPILFNDSSTRGLGNDADYSIRFEQS 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00157 233 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 127 176 IPR011598 GO:0046983
Cca03g00157 233 SMART finulus 133 182 IPR011598 GO:0046983
Cca03g00157 233 Gene3D - 130 187 IPR036638 GO:0046983
Cca03g00157 233 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 132 187 IPR036638 GO:0046983
Cca03g00157 233 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 191 IPR045843 GO:0003700|GO:0006355
Cca03g00157 233 CDD bHLH_AtIND_like 128 185 - -
Cca03g00157 233 Pfam Helix-loop-helix DNA-binding domain 137 176 IPR011598 GO:0046983
Cca03g00157 233 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 28 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00157 Cca-Chr3 2371472 2373402 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00157 36 192 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G09750 66.061 4.45e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00157 HLH 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00157 - - gmx:100779374 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02250 09 47733183 47734880 Cca03g00157 03 2371472 2373402 PCT