Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00156 ATGAGTGGAAGTGGCAAGAAGCGCTCATCAAAGTGGGATTTGACAGATGAGCCTGAATTTGAACCTGATAATAGTAAGCAATCACGGTCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCAAAGTGGTCTTATTTGGAAGGAACTGATAAATTAAAGCCTGGTGTGGGATTTTCATCCAAAGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGACGATGTTATGAATAAGGACTATAGAATTTTGGATACAACAATGGAATGGGATGAGGATGGAAGTTACAACAAGAAAATGTCTCCTGCATTTGAGGAATGGAAATATAAGAGACAGAGTCAATCCCCTAAAAATGGTTGGAACAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAACGACAGAAATAGAACAAGGGCTGGAGGATCGACACTACCATGTAGAGATTTTGTTGCTGGTAAATGCAGAAGAGGCAGCCATTGCCATTTTCCTCACCATGATAATCAAAATCACGAGGATAGTTGGGAAAATAAGTTCGGTGAAGATGGAGCTCCCAGATATTCTGCTTCCCGTGAGGGTAGAGATTATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATTAATTTTGCAAAAGGCAGGTGTAGAATGGGTGCATCGTGCAAGTTTGTGCATCATAACAATTCTGATGGACATGGTAAAGTTTCTGCAGATGAATTTACCAAAGAGAGAGAATTTGATAGAAGGCACAGAGATAGTTATTTTGAGCAGGGTGGTGGACATGTGCCAAACCGCAGTGGTGATACACTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATCAAGAGATGATAGGTGGGCAAGCAATCCTGGGGGAGATCATTATATGCTGGATAGACCAAAATTGAGTGATTCAGTTAGTCCTAATAGGAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTGACAAGGATGATGCAGATAAAGTTTGGGACAGTCCAAAGCGCAATGGTACAGTTGCCGTCTCTGACACAGCAAAGCTGGTTGAGGACAAAAGTGAAAACGTGGGTGTTGCAGTTCCAGGGTTCACTCCTTTGCCTATGAGGGATGGATGGGGTCATAGTTTGGATAAGAGCAGAGTGCATGGTGAACAAGCATTTTCAAGTGATAAGAAGGAAGCTGACATTTGGATTGCAGGAAATACTGCTGCCAACATGCATGGTTCCCGGTCAATAGGTACAGACATTTGGTTGAGTGATACAAAAATGTCTCCTGATTGGGATTACAGGGTGGGATCTTCCAGCTGTATTGAAGATAAGCACGAACAAAAAAAGCATGGGATAACCCAGGGTAGTATGCATTTATCCACCTCTGAACATGACAGAATGCAAATTGTTCCAGGACAAGGTTTTAGTCAGAATGCCGACAGTTTGAATCCTTTGCATTCTTCTAGCTGCCAAGCAGTTGGACAAAGTCCAGTAGTTGTTCCCATTCTACCTTCAAAGGGAGGATTTGTTGATGGTGTGCCAAACCAGGAAGTCACTACTGAGAAAAAGTACACTGCTGAACCTAATATCANNNNNNNNNNNNNNNNNNNNNAGTACACTGCTGAACCTAATATCATGGATGCAGGCTTATCACAAGTTAGCTCAAGAAACCCCCCTCCAACTGAGAAGGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCTCATATTCTTGGGACAGGGCCACAGCTGCCGCAACTTTATGCTGCTTTAAATTCTCAAGATGCAAAGGACACATCCTCCCTAGCAAACACTGAGGTGCCTGCTATGCCTGTTTCCAATACATTCATCAGGACAGATCCTTCTGTTGGACTCCCAAAACATTATGATCCAATGTGTGACAGTACTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTACCCCCAGCCATTCCTCTAAGTAAAAAAGTTGCAGAAGATGTAGAGGAAATTCCATCAGAGGTTTCCAACACAAGACAAAATTGTGGCAATTCTTCCAAGGCTTCTGGTTCAGAAGGACTTGTCAAGAGTGATCCTCTAATCCAGATGCAGTCAGCTCAGAACACTGGGGTTAATAAGGATAATAACAAGGAAGTGTTACCAGAGGAAGGGAAAAAATTTCAAGATGATCCTATAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGACCAAACTGGTGGTCCTGATGAGGCCAAGAAAACAAAGGATATGAAGGGGACTCGTGCTTTTAAATTTGCATTGGTTGAGTTTTTTAAGGAGTTTCTGAAACCAACATGGAGAGACGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAATCTGTTGATAAAGTAACTGGTGCCATGCAGGGGGCCATTCCTCAGACACCAGAGAAAATTGACAACTATTTGTCAATTGCAACACCAAAGCTTCACAAACTTGTACAGGCGTATCTGGAAAAGTTTAAGAAGGCTTAG 2586 0.4242 MSGSGKKRSSKWDLTDEPEFEPDNSKQSRSGWSSADVAGSNSSKWSYLEGTDKLKPGVGFSSKEPFSGGRGSNKDDVMNKDYRILDTTMEWDEDGSYNKKMSPAFEEWKYKRQSQSPKNGWNRSRSRSPPHGFRWDSGVNDRNRTRAGGSTLPCRDFVAGKCRRGSHCHFPHHDNQNHEDSWENKFGEDGAPRYSASREGRDYSLKSGRSNEACINFAKGRCRMGASCKFVHHNNSDGHGKVSADEFTKEREFDRRHRDSYFEQGGGHVPNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRSRDDRWASNPGGDHYMLDRPKLSDSVSPNRRPRDDRWGSDGDKDDADKVWDSPKRNGTVAVSDTAKLVEDKSENVGVAVPGFTPLPMRDGWGHSLDKSRVHGEQAFSSDKKEADIWIAGNTAANMHGSRSIGTDIWLSDTKMSPDWDYRVGSSSCIEDKHEQKKHGITQGSMHLSTSEHDRMQIVPGQGFSQNADSLNPLHSSSCQAVGQSPVVVPILPSKGGFVDGVPNQEVTTEKKYTAEPNIXXXXXXXXYTAEPNIMDAGLSQVSSRNPPPTEKVVGKEQLAQLTNLSASLAHILGTGPQLPQLYAALNSQDAKDTSSLANTEVPAMPVSNTFIRTDPSVGLPKHYDPMCDSTEPKSAVASGVPPAIPLSKKVAEDVEEIPSEVSNTRQNCGNSSKASGSEGLVKSDPLIQMQSAQNTGVNKDNNKEVLPEEGKKFQDDPISTKENGPLENMDQTGGPDEAKKTKDMKGTRAFKFALVEFFKEFLKPTWRDGQITKEDYKTIVKKSVDKVTGAMQGAIPQTPEKIDNYLSIATPKLHKLVQAYLEKFKKA 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00156 861 Gene3D - 268 322 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 324 359 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 736 752 - -
Cca03g00156 861 Gene3D - 146 246 - -
Cca03g00156 861 SUPERFAMILY CCCH zinc finger 274 297 IPR036855 GO:0046872
Cca03g00156 861 MobiDBLite consensus disorder prediction 9 24 - -
Cca03g00156 861 SMART c3hfinal6 150 174 IPR000571 GO:0046872
Cca03g00156 861 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Cca03g00156 861 SMART c3hfinal6 209 234 IPR000571 GO:0046872
Cca03g00156 861 MobiDBLite consensus disorder prediction 655 675 - -
Cca03g00156 861 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 1 859 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 303 364 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 694 735 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 110 148 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 173 198 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 25 48 - -
Cca03g00156 861 ProSiteProfiles Zinc finger C3H1-type profile. 208 235 IPR000571 GO:0046872
Cca03g00156 861 ProSiteProfiles Zinc finger C3H1-type profile. 272 299 IPR000571 GO:0046872
Cca03g00156 861 Pfam RNA-binding, Nab2-type zinc finger 213 232 - -
Cca03g00156 861 Pfam RNA-binding, Nab2-type zinc finger 153 170 - -
Cca03g00156 861 MobiDBLite consensus disorder prediction 1 81 - -
Cca03g00156 861 PANTHER ZINC FINGER CCCH DOMAIN PROTEIN-RELATED 1 859 - -
Cca03g00156 861 Pfam CCCH-type zinc finger 277 297 IPR041367 -
Cca03g00156 861 MobiDBLite consensus disorder prediction 693 775 - -
Cca03g00156 861 ProSiteProfiles Zinc finger C3H1-type profile. 148 176 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00156 Cca-Chr3 2293238 2301716 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca03g00156 zf-CCCH_4 2e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00156 - K22909 gmx:100783856 1378.23