Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g00156 | ATGAGTGGAAGTGGCAAGAAGCGCTCATCAAAGTGGGATTTGACAGATGAGCCTGAATTTGAACCTGATAATAGTAAGCAATCACGGTCTGGGTGGTCCTCTGCAGATGTTGCTGGTAGCAATAGTTCAAAGTGGTCTTATTTGGAAGGAACTGATAAATTAAAGCCTGGTGTGGGATTTTCATCCAAAGAACCTTTTTCTGGAGGCAGAGGTTCAAATAAGGACGATGTTATGAATAAGGACTATAGAATTTTGGATACAACAATGGAATGGGATGAGGATGGAAGTTACAACAAGAAAATGTCTCCTGCATTTGAGGAATGGAAATATAAGAGACAGAGTCAATCCCCTAAAAATGGTTGGAACAGGAGTCGAAGCAGGAGCCCTCCTCATGGTTTTAGGTGGGATTCAGGAGTCAACGACAGAAATAGAACAAGGGCTGGAGGATCGACACTACCATGTAGAGATTTTGTTGCTGGTAAATGCAGAAGAGGCAGCCATTGCCATTTTCCTCACCATGATAATCAAAATCACGAGGATAGTTGGGAAAATAAGTTCGGTGAAGATGGAGCTCCCAGATATTCTGCTTCCCGTGAGGGTAGAGATTATTCTCTTAAGAGTGGTAGATCTAATGAAGCTTGTATTAATTTTGCAAAAGGCAGGTGTAGAATGGGTGCATCGTGCAAGTTTGTGCATCATAACAATTCTGATGGACATGGTAAAGTTTCTGCAGATGAATTTACCAAAGAGAGAGAATTTGATAGAAGGCACAGAGATAGTTATTTTGAGCAGGGTGGTGGACATGTGCCAAACCGCAGTGGTGATACACTTTGCAAATTTTTTGCTAATGGAAATTGTCGTAATGGTAAATATTGTAGGTTTTCTCATGATAGGCAAGCATGTAGGAGCCCTAATAGAAGATCAAGAGATGATAGGTGGGCAAGCAATCCTGGGGGAGATCATTATATGCTGGATAGACCAAAATTGAGTGATTCAGTTAGTCCTAATAGGAGGCCAAGGGATGATAGGTGGGGTTCAGATGGTGACAAGGATGATGCAGATAAAGTTTGGGACAGTCCAAAGCGCAATGGTACAGTTGCCGTCTCTGACACAGCAAAGCTGGTTGAGGACAAAAGTGAAAACGTGGGTGTTGCAGTTCCAGGGTTCACTCCTTTGCCTATGAGGGATGGATGGGGTCATAGTTTGGATAAGAGCAGAGTGCATGGTGAACAAGCATTTTCAAGTGATAAGAAGGAAGCTGACATTTGGATTGCAGGAAATACTGCTGCCAACATGCATGGTTCCCGGTCAATAGGTACAGACATTTGGTTGAGTGATACAAAAATGTCTCCTGATTGGGATTACAGGGTGGGATCTTCCAGCTGTATTGAAGATAAGCACGAACAAAAAAAGCATGGGATAACCCAGGGTAGTATGCATTTATCCACCTCTGAACATGACAGAATGCAAATTGTTCCAGGACAAGGTTTTAGTCAGAATGCCGACAGTTTGAATCCTTTGCATTCTTCTAGCTGCCAAGCAGTTGGACAAAGTCCAGTAGTTGTTCCCATTCTACCTTCAAAGGGAGGATTTGTTGATGGTGTGCCAAACCAGGAAGTCACTACTGAGAAAAAGTACACTGCTGAACCTAATATCANNNNNNNNNNNNNNNNNNNNNAGTACACTGCTGAACCTAATATCATGGATGCAGGCTTATCACAAGTTAGCTCAAGAAACCCCCCTCCAACTGAGAAGGTGGTAGGCAAAGAACAGCTTGCTCAGCTTACCAATCTCTCAGCCTCTCTGGCTCATATTCTTGGGACAGGGCCACAGCTGCCGCAACTTTATGCTGCTTTAAATTCTCAAGATGCAAAGGACACATCCTCCCTAGCAAACACTGAGGTGCCTGCTATGCCTGTTTCCAATACATTCATCAGGACAGATCCTTCTGTTGGACTCCCAAAACATTATGATCCAATGTGTGACAGTACTGAGCCAAAGAGTGCTGTTGCAAGTGGGGTACCCCCAGCCATTCCTCTAAGTAAAAAAGTTGCAGAAGATGTAGAGGAAATTCCATCAGAGGTTTCCAACACAAGACAAAATTGTGGCAATTCTTCCAAGGCTTCTGGTTCAGAAGGACTTGTCAAGAGTGATCCTCTAATCCAGATGCAGTCAGCTCAGAACACTGGGGTTAATAAGGATAATAACAAGGAAGTGTTACCAGAGGAAGGGAAAAAATTTCAAGATGATCCTATAAGTACCAAAGAGAATGGTCCTTTGGAAAACATGGACCAAACTGGTGGTCCTGATGAGGCCAAGAAAACAAAGGATATGAAGGGGACTCGTGCTTTTAAATTTGCATTGGTTGAGTTTTTTAAGGAGTTTCTGAAACCAACATGGAGAGACGGTCAAATCACCAAAGAAGATTATAAAACAATTGTGAAGAAATCTGTTGATAAAGTAACTGGTGCCATGCAGGGGGCCATTCCTCAGACACCAGAGAAAATTGACAACTATTTGTCAATTGCAACACCAAAGCTTCACAAACTTGTACAGGCGTATCTGGAAAAGTTTAAGAAGGCTTAG | 2586 | 0.4242 | MSGSGKKRSSKWDLTDEPEFEPDNSKQSRSGWSSADVAGSNSSKWSYLEGTDKLKPGVGFSSKEPFSGGRGSNKDDVMNKDYRILDTTMEWDEDGSYNKKMSPAFEEWKYKRQSQSPKNGWNRSRSRSPPHGFRWDSGVNDRNRTRAGGSTLPCRDFVAGKCRRGSHCHFPHHDNQNHEDSWENKFGEDGAPRYSASREGRDYSLKSGRSNEACINFAKGRCRMGASCKFVHHNNSDGHGKVSADEFTKEREFDRRHRDSYFEQGGGHVPNRSGDTLCKFFANGNCRNGKYCRFSHDRQACRSPNRRSRDDRWASNPGGDHYMLDRPKLSDSVSPNRRPRDDRWGSDGDKDDADKVWDSPKRNGTVAVSDTAKLVEDKSENVGVAVPGFTPLPMRDGWGHSLDKSRVHGEQAFSSDKKEADIWIAGNTAANMHGSRSIGTDIWLSDTKMSPDWDYRVGSSSCIEDKHEQKKHGITQGSMHLSTSEHDRMQIVPGQGFSQNADSLNPLHSSSCQAVGQSPVVVPILPSKGGFVDGVPNQEVTTEKKYTAEPNIXXXXXXXXYTAEPNIMDAGLSQVSSRNPPPTEKVVGKEQLAQLTNLSASLAHILGTGPQLPQLYAALNSQDAKDTSSLANTEVPAMPVSNTFIRTDPSVGLPKHYDPMCDSTEPKSAVASGVPPAIPLSKKVAEDVEEIPSEVSNTRQNCGNSSKASGSEGLVKSDPLIQMQSAQNTGVNKDNNKEVLPEEGKKFQDDPISTKENGPLENMDQTGGPDEAKKTKDMKGTRAFKFALVEFFKEFLKPTWRDGQITKEDYKTIVKKSVDKVTGAMQGAIPQTPEKIDNYLSIATPKLHKLVQAYLEKFKKA | 861 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g00156 | 861 | Gene3D | - | 268 | 322 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 324 | 359 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 736 | 752 | - | - | |
Cca03g00156 | 861 | Gene3D | - | 146 | 246 | - | - | |
Cca03g00156 | 861 | SUPERFAMILY | CCCH zinc finger | 274 | 297 | IPR036855 | GO:0046872 | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 9 | 24 | - | - | |
Cca03g00156 | 861 | SMART | c3hfinal6 | 150 | 174 | IPR000571 | GO:0046872 | |
Cca03g00156 | 861 | SMART | c3hfinal6 | 272 | 298 | IPR000571 | GO:0046872 | |
Cca03g00156 | 861 | SMART | c3hfinal6 | 209 | 234 | IPR000571 | GO:0046872 | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 655 | 675 | - | - | |
Cca03g00156 | 861 | PANTHER | PROTEIN FRIGIDA-ESSENTIAL 1 | 1 | 859 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 303 | 364 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 694 | 735 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 110 | 148 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 173 | 198 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 25 | 48 | - | - | |
Cca03g00156 | 861 | ProSiteProfiles | Zinc finger C3H1-type profile. | 208 | 235 | IPR000571 | GO:0046872 | |
Cca03g00156 | 861 | ProSiteProfiles | Zinc finger C3H1-type profile. | 272 | 299 | IPR000571 | GO:0046872 | |
Cca03g00156 | 861 | Pfam | RNA-binding, Nab2-type zinc finger | 213 | 232 | - | - | |
Cca03g00156 | 861 | Pfam | RNA-binding, Nab2-type zinc finger | 153 | 170 | - | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Cca03g00156 | 861 | PANTHER | ZINC FINGER CCCH DOMAIN PROTEIN-RELATED | 1 | 859 | - | - | |
Cca03g00156 | 861 | Pfam | CCCH-type zinc finger | 277 | 297 | IPR041367 | - | |
Cca03g00156 | 861 | MobiDBLite | consensus disorder prediction | 693 | 775 | - | - | |
Cca03g00156 | 861 | ProSiteProfiles | Zinc finger C3H1-type profile. | 148 | 176 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g00156 | Cca-Chr3 | 2293238 | 2301716 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Cca03g00156 | zf-CCCH_4 | 2e-06 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g00156 | - | K22909 | gmx:100783856 | 1378.23 |