Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00155 ATGGTTACAATTACAAAACCCCGTAAACCCATCGTCGCATTCTCGATCCTCAGATCCATCATCCTCCTCTCAATGACGTCCCTAAtcttcctctccctcctcctcctcctccACGTCAGCCCTAAAGCCTCCGCGGACCTCCACGAAGCCTGCAACGCCACGCGCTCTCCTCTCCAATGCCATTCCTCCCTCTCCCCGCACCTCCCTCCGAATCCCACCCCTCTGGAAATCATCCACTCCGCCATCTCCCTCTCCAACGACCACCTCGCCAACGCCCGCTCCAACCTCCGCACCATCTCCCTCGCCTCCTCCGCCAACCTCACCCGCTCCACCGCCGTCAAGACCTGCCTCCAGGTCCTCCGCTACTCCCACCACCGCAACGTCCTCGCCGCCCGCGCCCTCCCCACCAAACACGCCCGCGCCTGGCTCAGCGCCGCCCTCGCCTACCAGTACGGCTGCTCCTCCGGCCTTAAGTACGTCAACGCCATCGAAACCGTCTTCGCCGCCCAAACCATGACGCTCCTCGACTCTCTCGTCAATATCACCAGCAACGCCCTCAACATGCTCGTCTCCTACCACCGCTTCGGGAACGACACCGCCGCCTGGTCCCCGCCGCTCACCGAGCGCGACGGCTTCTGGGAGCCCCCCGTGGCCGAGGGGTTCGCGCCGGGGCCCGCCGCGCCAGCCACGCTGACTCCGGACGTTACGGTGTGTAAGAGAAAGGACGATGGGTGCTATGAGAGCGTGCAGGATGCGGTTAATGCGGCACCGAATAACTCGGATAAGAGGTTTGTGATATACATTAAGGAAGGGGTTTATACAGAGAGGGTGAGGGTTCCGTTGAGGAAGAGGAATGTGGTGTTCTTGGGGGATGGCATGGGCAAGACTGTGATAACGGGATCTGCTAACGTGGGCCAGCCTGGAATCACAACCTACAACTCTGCCACCGTAGGGGTTGCTGGGGATGGGTTTGTAGCAAAGAATCTCACGATCCAGAACACGGCTGGTCCTAATGCTCACCAAGCAGTGGCCTTCAGATCAGATAGCGACCTTTCTGTGATTGAGAACTGTGAATTCATTGGCAATCAAGATACTCTTTATGCTCATTCCCTGCGCCAATTTTATAAATCTTGCCGTATACTAGGTAATGTGGACTTCATCTTTGGGAACTCGGCGTCAATCTTCCAAGACTGTGAAATCCTAGTCCGGCCCAGGCAAGAAGAGCCACAGAAGGGAGAGAACAATGCCGTTACCGCCCACGGCAGGACAGACCCAGCTCAGTCAACTGGATTTGTTTTCAATAACTGCACGATTAACGGTACTGAGGAATACATGACATTGTATAATAGCAAGCCTCAGGTTCACATCAACTATCTGGGTAGGCCTTGGAAGGAGTATTCTAGAACAGTTTTCATCCATTCGTTCTTGGGAGCCCTTATCACACCACAGGGATGGATGCCATGGAGTGGGGATTTTGCACTGAAAACACTTTATTATGGGGAATTTGAGAACTCAGGACCTGGTTCTAATCCGACTCAGAGGGTGCCATGGAGTAACCAGGTCCCAGCTGAGCATGTGTCCTCGTATTCAGCGCAGAGTTTCATTCAAGGAGATGATTGGAATCGTCATCTTAGTTATTAG 1641 0.5417 MVTITKPRKPIVAFSILRSIILLSMTSLIFLSLLLLLHVSPKASADLHEACNATRSPLQCHSSLSPHLPPNPTPLEIIHSAISLSNDHLANARSNLRTISLASSANLTRSTAVKTCLQVLRYSHHRNVLAARALPTKHARAWLSAALAYQYGCSSGLKYVNAIETVFAAQTMTLLDSLVNITSNALNMLVSYHRFGNDTAAWSPPLTERDGFWEPPVAEGFAPGPAAPATLTPDVTVCKRKDDGCYESVQDAVNAAPNNSDKRFVIYIKEGVYTERVRVPLRKRNVVFLGDGMGKTVITGSANVGQPGITTYNSATVGVAGDGFVAKNLTIQNTAGPNAHQAVAFRSDSDLSVIENCEFIGNQDTLYAHSLRQFYKSCRILGNVDFIFGNSASIFQDCEILVRPRQEEPQKGENNAVTAHGRTDPAQSTGFVFNNCTINGTEEYMTLYNSKPQVHINYLGRPWKEYSRTVFIHSFLGALITPQGWMPWSGDFALKTLYYGEFENSGPGSNPTQRVPWSNQVPAEHVSSYSAQSFIQGDDWNRHLSY 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00155 546 Gene3D Invertase/pectin methylesterase inhibitor family protein 43 191 IPR035513 -
Cca03g00155 546 CDD PMEI-like_3 50 188 - -
Cca03g00155 546 Gene3D - 228 546 IPR012334 -
Cca03g00155 546 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 47 188 IPR035513 -
Cca03g00155 546 SUPERFAMILY Pectin lyase-like 231 543 IPR011050 -
Cca03g00155 546 Pfam Pectinesterase 234 538 IPR000070 GO:0030599|GO:0042545
Cca03g00155 546 PANTHER PECTINESTERASE 22 541 - -
Cca03g00155 546 Pfam Plant invertase/pectin methylesterase inhibitor 47 188 IPR006501 GO:0004857
Cca03g00155 546 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 22 541 - -
Cca03g00155 546 SMART PMEI_2 42 188 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00155 Cca-Chr3 2272848 2275759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00155 39 540 Carbohydrate Esterase AT5G09760 62.863 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00155 - - gmx:100802102 785.023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02248 09 47692399 47694537 Cca03g00155 03 2272848 2275759 PCT