Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00152 ATGGCTCCAGCCGCCTCCTCCCCCTCGGCTCAGAGGCACGTGGGCTTCAGCCGCCGCACGCAGGCACCGCGCCGGCAAGACTCGTCCTCGCCGACTCCCGCGCCGAAGAAGTACCGCATGCTGACGGAGGTAATGGCGCGCGCACCCTACGCGGTGCTGGAACGGGAGACCTACAGCGACCTCATGTGCGAGCAATGTGGCTCCGGCGAGCTGCCGGACGAGCTGCTTCTCTGCGACAAATGCGACAGAGGCTTTCACATGAAATGTGTGAGGCCAATCGTGGTCAGGGTTCCGATTGGATCGTGGCTTTGCCCTAAGTGTCAGGGAGGGAAGAGAGTGCGCCCTTTCTCTCAGAAGAGGATAATCGATTTCTTCGGGATTCGGAGGAGCTTCGCTGATGATGCCAACGACAAACGATCTTCTCGCGATGCTAAGAAGCGTCGCAAACGTTCTCGACCTTTGGTATTACAAAAGAAAAAGAGGAGATTGTTACCATATGTTCCTACAGAAGATCCTGACCAGAGAATGAAACAGATGGGTTCCCTTGCTACTGCTTTAACAGCGTTAAATATAGAATTCAGTGATCACCTCACATATTTGCCTGGAATGGCTCCTAGATCTGCGAATCAAGCCCTACTAGAAGACGGTGGCATGCAGACTCTTACCAAGGAAGATATGGAGACTGTAGAACACTGCAATGCTATGTCTAAAAGAGGCGAATTCCCTCCCTTTATGGTTGTTTATGACTCACATGAAGGTTATACTGTTGAGGCTGATGACACAATCAAGGATATGACACTTATTGCTGAATATACTGGGGATGTGGATTACCTTCGCAAACGGGAACGTGATGATTGTGACAGTATGATGACCCTTCTTATTGCTGCAGAAAGTTGTGATAGTCTTGTTATCTGTGCTGATAAACGTGGAAACATTGCTCGCTTTATCAGTGGCATCAACAATCATACACAGGAAGGTAGGAAGAAGCAGAATTGTAAATGTTTGAGATACAATGTTGATGGCGAATGTAGGGTCTTTTTGGTTGCTACTCGAGATATTTCTAAGGGGGAGAGACTTTATTACGATTATAATGGTCATGAGTATCAATACCCGACTCATCATTTTGTCTGA 1131 0.4854 MAPAASSPSAQRHVGFSRRTQAPRRQDSSSPTPAPKKYRMLTEVMARAPYAVLERETYSDLMCEQCGSGELPDELLLCDKCDRGFHMKCVRPIVVRVPIGSWLCPKCQGGKRVRPFSQKRIIDFFGIRRSFADDANDKRSSRDAKKRRKRSRPLVLQKKKRRLLPYVPTEDPDQRMKQMGSLATALTALNIEFSDHLTYLPGMAPRSANQALLEDGGMQTLTKEDMETVEHCNAMSKRGEFPPFMVVYDSHEGYTVEADDTIKDMTLIAEYTGDVDYLRKRERDDCDSMMTLLIAAESCDSLVICADKRGNIARFISGINNHTQEGRKKQNCKCLRYNVDGECRVFLVATRDISKGERLYYDYNGHEYQYPTHHFV 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00152 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 120 IPR013083 -
Cca03g00152 376 SUPERFAMILY SET domain 232 367 IPR046341 -
Cca03g00152 376 Gene3D SET domain 147 376 IPR046341 -
Cca03g00152 376 ProSitePatterns Zinc finger PHD-type signature. 63 107 IPR019786 -
Cca03g00152 376 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATXR5 11 374 - -
Cca03g00152 376 Pfam SET domain 282 364 IPR001214 GO:0005515
Cca03g00152 376 Pfam PHD-finger 62 108 IPR019787 -
Cca03g00152 376 MobiDBLite consensus disorder prediction 10 35 - -
Cca03g00152 376 CDD PHD_RSF1 62 107 - -
Cca03g00152 376 SUPERFAMILY FYVE/PHD zinc finger 50 114 IPR011011 -
Cca03g00152 376 MobiDBLite consensus disorder prediction 1 36 - -
Cca03g00152 376 CDD SET_ATXR5_6-like 239 376 - -
Cca03g00152 376 SMART PHD_3 62 108 IPR001965 -
Cca03g00152 376 ProSiteProfiles Zinc finger PHD-type profile. 60 110 IPR019787 -
Cca03g00152 376 ProSiteProfiles SET domain profile. 242 364 IPR001214 GO:0005515
Cca03g00152 376 PANTHER HISTONE ACETYLTRANSFERASE 11 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00152 Cca-Chr3 2211491 2215557 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00152 53 129 C2H2 Transcription Factor Family AT3G01460 33.766 2.94e-10 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Cca03g00152 SET 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00152 K24406 - gmx:100785817 661.759