Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00150 ATGGTGAGACTCAGAGACGACCTCTGCATAACCGTTCCAACCTTCTTCAAGTGCCCCATCTCCCTCGACGTCATGAAATCCCCTGTCAGCCTCTGCACCGGAGTCACCTACGACCGCTCCAGCATCCAACGCTGGCTCGACGCCGGCAACAACACCTGCCCCGCCACCATGCAACTCCTCCAAACCAAGGACTTGCTCCCCAACCGAACCCTACACAGCCTCATCCAGATCTGGTCCGATTCGCTTCACCGCCCCCAACCACTCGCAACCCTATCTGACTTACAAACCCAAACCCAATCCCTAAGCCTCTCTTCGCTCGCCAAGCTGCGTCACTTCGCCCAACACTCTCACCACAACAAACTCCTCCTCGCCAAAACGGAAGGCTTCGTCGATCAACTCCTCCACAATGTCACCGGGACCTGTGTTGACTTTCTCCAACAACTCCTCGTCCTGTTAGCTTTGCTTCTGGACAGCATCGAAGATCGCGACGGATTCAGAAACTCTATGCTCAAAGGAAACAAGCACGGATTGGATTCTCTGCTTCTCGTTCTGCAACGAGGAAGCTCCGAGTCGAAAATCGCCGCGGCTAGGATTCTGCAGTTCGTCGCGGCGGACGCGGAGGCGAAGCTGTTAATCGCGGAGAAGGAAGGCGTGCTGGCGGAGTTGCTGAAATTGGCGGCGCCGGAGAAAGATCCGGAGGTAATCGAGAACGCTCTGGCGGCTTTGGTGGCGGTCTCGACGCCCAAGCGGAGCAAGTCGAAGCTGGTGAGGCTGGGCGCGGTGAGGGCGATGTCGAGGCTGTTGACGGAGGCGAATTTGGGCGCGGCGGCGGTGGAGAAGGTGCTGAAGGTGGTGGAGACGGCGTCGGCGACGAGGGAGGGGAGGAGGGAGATATGCGAGGAGGCGGCGTGCGTGGCGGCGGTGCTGAGCAAGGTTCTGAAGGTGTCGAGCGCGGCGACGGAGCACGCGGTGACGACGCTGTGGAGCGTGTGTTACCTCTTCCGCGATCGCAAGGCGCAGGAGGCGGTGACGCAGGCCAATGGCTTGACCAAGATTCTGTTGCTGATGCAGAGCAATTGCGCGCCCCACGTGCGCCAAATGTGCACCGATTTGCTCAAGATCTTCCGGGTTAACTCCAAGTCCTGCCTCTCTTGCTACGACACCAAAACCACTCATATCATGCCCTTCTGA 1191 0.5886 MVRLRDDLCITVPTFFKCPISLDVMKSPVSLCTGVTYDRSSIQRWLDAGNNTCPATMQLLQTKDLLPNRTLHSLIQIWSDSLHRPQPLATLSDLQTQTQSLSLSSLAKLRHFAQHSHHNKLLLAKTEGFVDQLLHNVTGTCVDFLQQLLVLLALLLDSIEDRDGFRNSMLKGNKHGLDSLLLVLQRGSSESKIAAARILQFVAADAEAKLLIAEKEGVLAELLKLAAPEKDPEVIENALAALVAVSTPKRSKSKLVRLGAVRAMSRLLTEANLGAAAVEKVLKVVETASATREGRREICEEAACVAAVLSKVLKVSSAATEHAVTTLWSVCYLFRDRKAQEAVTQANGLTKILLLMQSNCAPHVRQMCTDLLKIFRVNSKSCLSCYDTKTTHIMPF 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00150 396 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 27-RELATED 6 396 - -
Cca03g00150 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 82 IPR013083 -
Cca03g00150 396 SUPERFAMILY ARM repeat 94 378 IPR016024 -
Cca03g00150 396 Pfam U-box domain 12 79 IPR003613 GO:0004842|GO:0016567
Cca03g00150 396 Gene3D - 277 375 IPR011989 -
Cca03g00150 396 SUPERFAMILY RING/U-box 8 79 - -
Cca03g00150 396 Gene3D - 83 276 IPR011989 -
Cca03g00150 396 CDD RING-Ubox_PUB 16 58 IPR045210 -
Cca03g00150 396 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Cca03g00150 396 PANTHER WDSAM1 PROTEIN 6 396 IPR045185 GO:0061630
Cca03g00150 396 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00150 Cca-Chr3 2159458 2161344 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00150 5 396 U-box Gene Family AT5G64660 48.810 1.77e-134 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00150 - - gmx:100801033 559.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02241 09 47626291 47628434 Cca03g00150 03 2159458 2161344 PCT