Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00149 ATGAGTTTGACAGAATCAGAATTCTCAGAGGAGGGTGCAGCAGGCCTTCAAGAGCCTCCTGATCCCAATGTTATTGAAATTGATCCCACTAGTCGCTATATTAGGTATAAAGAAGTCATTGGCAAAGGAGCTTTCAAGACTGTTTACAAGGCATTTGATGAAATCAATGGACTTGAAGTTGCATGGAGCCAAGTTCAGATTGATGAGGTATTACAGTCACCAGGTGGCCTAGAGAGGCTGTACTCAGAAGTACGTCTTTTGAAGACACTGAAGCACGATAACATAGTAAAGTTCTACAATTCTTGGATCGATGAAAAGCACAGGAATCTTAACTTGATAACTGAGTTGTTCACCTCAGGGAGCCTTAGACAGTATAGTCAGAAACACAAGAAGGTTGACATGAAGGCTATCAAAGGATGGGCAAGGCAGATTTTAATGGGTATAAACTATCTCCACTCTCACAACCCACCTGTTATGCATAGGGACCTGAAGTGTGATAATATATTTATTAATGGTCACCGGGGAGAAGTTAAAATTGGAGATCTAGGGTTGGCAACTTTGTTGAAGCAGACTAATGCCAAGAGTGTAATTGGAACCCCGGAGTTCATGGCACCTGAACTGTATGATGAACATTATAATGAATTAGCCGACATATATTCTTTTGGGATGTGCATGCTTGAGTTGGTTACGTCTGAATATCCTTACCGTGAATGTAGAAACTCAGCTCAGATATACAAGAAAGTTTCATCTGGCATAAAGCCTGCTGCACTTGCCAGAGTCAAAGATCCAGAAGTAAAATTATTTATTGAGAAATGTCTTGTCCCAGCACCTCAAAGATCGTCAGCAAAGGAGCTTCTGATGGACCATTTTCTCCAAGTGAATGGTTCGTTGAAGAATCGTCGTCTTCCATTACCAGATATTGTTCTTCCAAAATATGGAGCCTTCGAACATCGTTGTCTGATGTCAGAAGGTCCTGCTAGTACACGTGTTAGATCCATTTCAATGGATCTTGGTGATGCCACTGAGCTTCCATTGACCACTTTAGTTTATAACTCTGTTGATTCTGTTAATGATACATCATCTTCCCCTTGTGTTGAGATACGAAGGTTGAATGAAGGTGACAGATTTTTTCTAAAAGGCGAAGAAAATGATGAAAACTCGGTGTCATTGGTTCTCCGCATATCTGATCAGAGTGGGCGAGCAAGAAATATCCATTTCATATTCTACCTCGACAGTGATTCTGCCATCTCAGTTTCAAGTGAAATGGTTGAGCAACTAGAACTTTCTGAGCAAAGTGTTAAATTCATAGCAGAGTTAATTGATCTATTATTGATAACTTTGATTCCCAATTGGAAACCTTGTGTAGCGATTGATCATTTAGTTTCTTGTACTGGTAAACTAACTCATCCGAGTCAACGGAAAGAATCAGAGTTAGCAAAACACAGAGTAAACTCAGAAGATTTTAGCGAAAATGTGGCCGAAGATGTAGGTTCCTCAACCTCACCAGGAAGATCAGAAGAAAAGGAAAACCATGATACTGTGATTTTTCACGAGGTTTTGTCTCAAGCAAGCAATGATTTTCAAAGAGCAATAAAGAAAGATGATTTTTGTTCTGATATTTCATACACTTCTGAAACATCTGACTTCAATGATAAGCATTTTTCTACAGTTTCATTCATGTCTGCTAAATCAGGATTTACAGACTGTGACTTGCCTAAAGTTAATAGTCAATGCTCACTTGCTTCTGAAATGGGGGCATCACCTGATTATAGGTGTAAGTTGCCATGCTTAGAAAGCAATGGTATAATGAAATCCTTTAATTATCCCACTAGTGCTTCTTGCTCGTGTGAACATGAGGATGAGTTCAAAATAGAGTTAGAAATGATTGAACAGCAGTATCAAGATGCAATTAAAGAATTATCAAAAAGAAGATACCAGGCCATCGCAGAGACCAGCAGGAGACTGTCACAAAAATATGCAAGCATAAAATAA 1992 0.3916 MSLTESEFSEEGAAGLQEPPDPNVIEIDPTSRYIRYKEVIGKGAFKTVYKAFDEINGLEVAWSQVQIDEVLQSPGGLERLYSEVRLLKTLKHDNIVKFYNSWIDEKHRNLNLITELFTSGSLRQYSQKHKKVDMKAIKGWARQILMGINYLHSHNPPVMHRDLKCDNIFINGHRGEVKIGDLGLATLLKQTNAKSVIGTPEFMAPELYDEHYNELADIYSFGMCMLELVTSEYPYRECRNSAQIYKKVSSGIKPAALARVKDPEVKLFIEKCLVPAPQRSSAKELLMDHFLQVNGSLKNRRLPLPDIVLPKYGAFEHRCLMSEGPASTRVRSISMDLGDATELPLTTLVYNSVDSVNDTSSSPCVEIRRLNEGDRFFLKGEENDENSVSLVLRISDQSGRARNIHFIFYLDSDSAISVSSEMVEQLELSEQSVKFIAELIDLLLITLIPNWKPCVAIDHLVSCTGKLTHPSQRKESELAKHRVNSEDFSENVAEDVGSSTSPGRSEEKENHDTVIFHEVLSQASNDFQRAIKKDDFCSDISYTSETSDFNDKHFSTVSFMSAKSGFTDCDLPKVNSQCSLASEMGASPDYRCKLPCLESNGIMKSFNYPTSASCSCEHEDEFKIELEMIEQQYQDAIKELSKRRYQAIAETSRRLSQKYASIK 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00149 663 MobiDBLite consensus disorder prediction 471 510 - -
Cca03g00149 663 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672|GO:0006468
Cca03g00149 663 ProSiteProfiles Protein kinase domain profile. 34 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00149 663 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK6-RELATED 9 659 - -
Cca03g00149 663 CDD STKc_WNK 32 291 - -
Cca03g00149 663 Coils Coil 619 643 - -
Cca03g00149 663 Gene3D Phosphorylase Kinase; domain 1 19 115 - -
Cca03g00149 663 SMART serkin_6 34 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00149 663 Pfam Protein kinase domain 36 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00149 663 MobiDBLite consensus disorder prediction 1 23 - -
Cca03g00149 663 Gene3D - 386 460 - -
Cca03g00149 663 MobiDBLite consensus disorder prediction 471 489 - -
Cca03g00149 663 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 659 - -
Cca03g00149 663 Gene3D Transferase(Phosphotransferase) domain 1 117 297 - -
Cca03g00149 663 SUPERFAMILY Protein kinase-like (PK-like) 35 350 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00149 Cca-Chr3 2121583 2124991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00149 134 510 MAP Kinase Kinase Kinase AT1G49160 62.599 3.63e-168 486
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca03g00149 Pkinase 3e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00149 K08867 - gmx:121175054 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02238 09 47575987 47579480 Cca03g00149 03 2121583 2124991 PCT