Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00146 ATGAATTCTATTGCTGCTACTTCCTTCACTTCACCACTTGTCCATGAGTTCCAGCACTCAAGAAGGTTACTCCTCCACTCCCCACTTAACCAATCAGCAAAGCCCCCAACAAGCAGCCACGATTCAACAACAGAGACATATCTGGGAGACGGGAACTTCGATGCAAACGTTGTGATGGTCCTCTCGGTTCTCCTCTGTGCCCTAATATGCTCACTGGGTCTCAACTCCATCATAAGGTGTGCCCTAAGGTGTTCCAACTTCGTGGTGAGTGACTCAATGATATCATCAAGCAACAACAGCCCTCCCGCGAGAGTGGCCAACACTGGAGTGAAGAAAAAGGCCCTCAAGACTTTCCCCACAGTGAGTTACTCAACCGAGCTGAACCTGCCGAGTTTGGACTCCGAGTGTGTGATATGCTTGTCCGAGTTCACAAGCGGTGAAAAGGTTCGCATTTTGCCCAAGTGCAACCACGGCTTCCACGTTCGCTGCATTGACAAATGGCTAAGCTCACACTCCTCGTGCCCCAAATGCAGACAGTGCCTAATTGAGACTTGTCACAAGATTGTAGGGTGCAGTACTCAGCAAGCTAGCTCATCacaacaacaacaacaacCCGTGCCAGAAACCATTGTAACCATTGCGCCATTAGAGCCAGAAAGTATGGTGCGTAACTATAGGGAACTTAGCTAA 690 0.4826 MNSIAATSFTSPLVHEFQHSRRLLLHSPLNQSAKPPTSSHDSTTETYLGDGNFDANVVMVLSVLLCALICSLGLNSIIRCALRCSNFVVSDSMISSSNNSPPARVANTGVKKKALKTFPTVSYSTELNLPSLDSECVICLSEFTSGEKVRILPKCNHGFHVRCIDKWLSSHSSCPKCRQCLIETCHKIVGCSTQQASSSQQQQQPVPETIVTIAPLEPESMVRNYRELS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00146 229 PANTHER RING-H2 FINGER PROTEIN ATL78 5 228 IPR044602 GO:0016567|GO:0016740
Cca03g00146 229 Pfam Ring finger domain 135 178 IPR001841 -
Cca03g00146 229 ProSiteProfiles Zinc finger RING-type profile. 136 178 IPR001841 -
Cca03g00146 229 SMART ring_2 136 177 IPR001841 -
Cca03g00146 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 182 IPR013083 -
Cca03g00146 229 CDD RING-H2_PA-TM-RING 135 178 - -
Cca03g00146 229 SUPERFAMILY RING/U-box 114 183 - -
Cca03g00146 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00146 Cca-Chr3 2101487 2102490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00146 22 182 C3H Transcription Factor Family AT3G10910 48.810 2.13e-46 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00146 K19040 - gmx:100807227 366.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00146 03 2101487 2102490 Cca03g00146 03 2101487 2102490 ECH
Cca06g01161 06 26004103 26005427 Cca03g00146 03 2101487 2102490 ECH
Cca09g02234 09 47539869 47541019 Cca03g00146 03 2101487 2102490 PCT