Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00143 ATGTTGCAAATCTCAACTTTACCAGACAACGCGCCGCGCTCCGACGCCTCCAATCCCCAAGAAGACGCTCACCGGAATTCCCCCGTCCACCGCTGGCCTCGGGAGGAGACAATGGCCTTGCTCAAGATAAGGTCAGACATGGACCTTGCTTTCAGAGATTCAACCCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAACTAGAGGAAGTAGGATATCATCGTAGTGCCAAGAAGTGCAAGGAGAAATTCGAGAACATTTATAAGTACCATAGGAGGACCAAGGAAGGGCGTTGCGGCAAATCCAACGCTGCCAAAACCTATCGATTTTTCGAGCAATTGGAAGCTTTAGACCACTCACTTCCCCAGCCCGACAACAACGATGTTCATGTTGTTATTCGAGAGGCACACGCGGGGGAGCACTCTAGTTCCACCACTTGGAACAACAAGAGTAGGAAGATGAAGATGACGCAGTTCTTGGAGGCGTTGATGAGGGAAGTGATAGAGAAGCAAGAGGTGCTGCAGAAGAATTTCATGGAGGTGTTGGACAAGTGCGAGAGGGAAAGACTGGCCAGGGAGGAAGCGTGGAAGAAGGAGGAGTTGGCAAGGATTAAGAGAGAGCGTGAGCTTCTGGCTCAGGAAAGGTCCATTGCTGCGGCAAAAGATGAAGCAGTGCTTGCGTTTCTTAGAAAGTTCGCAGAAGCACAAGGCACGGTGCAGTTGCTCCACAAAATTCAGGTTCCAAACAAGGACATGCAACAAAATGGGAATGATGTGACTCATATGGATAAGCATCAAGAATGTGGAAATGTTGCTGTGGGGAGTTTGGTGCATGTGACTGCTTCAAGGTGGCCTAAGGATGAAGTTGAGGCTTTGATAAGGTTGAGGACACAGCTAGAGGTGCAGTCacaagggaataataataataataatgataataattctactactaataataatgggtctaaggggcctctttgggaggagatatctttggcaatGAAAAGTCTTGGCTATGATCGCAGTGCCAAGAGATGTAAGGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCTCAGGATTCCAAAACGTGTCCTTATTACCACCATCTCGAGGCTTTGTATAGTAAAAGGCCTAAGAAGGTGGATGAGTCTGGTGGTTGTGATACTAATAATAATAGTTCTGGGAATGAGTTGAAGCCTGAGGAGTTGTTGTTGCATATCATGGAGAGTCAAGAAGAGAGacaacaacaacaacaacaacaCATGGATGAGTCATCTTCTGAAGATGCTGAGAGAGAGAACACGGATCAGAATGAAGATCAAAGTGGGTATCAGAATCAGACGGTTGATAATAGTCCTGCTTCTATAGCAATTATGAGTTAA 1413 0.4345 MLQISTLPDNAPRSDASNPQEDAHRNSPVHRWPREETMALLKIRSDMDLAFRDSTPKAPLWEQVSRKLEEVGYHRSAKKCKEKFENIYKYHRRTKEGRCGKSNAAKTYRFFEQLEALDHSLPQPDNNDVHVVIREAHAGEHSSSTTWNNKSRKMKMTQFLEALMREVIEKQEVLQKNFMEVLDKCERERLAREEAWKKEELARIKRERELLAQERSIAAAKDEAVLAFLRKFAEAQGTVQLLHKIQVPNKDMQQNGNDVTHMDKHQECGNVAVGSLVHVTASRWPKDEVEALIRLRTQLEVQSQGNNNNNNDNNSTTNNNGSKGPLWEEISLAMKSLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEALYSKRPKKVDESGGCDTNNNSSGNELKPEELLLHIMESQEERQQQQQQHMDESSSEDAERENTDQNEDQSGYQNQTVDNSPASIAIMS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00143 470 MobiDBLite consensus disorder prediction 18 33 - -
Cca03g00143 470 SMART sant 28 90 IPR001005 -
Cca03g00143 470 SMART sant 280 356 IPR001005 -
Cca03g00143 470 ProSiteProfiles Myb-like domain profile. 31 88 IPR001005 -
Cca03g00143 470 MobiDBLite consensus disorder prediction 387 470 - -
Cca03g00143 470 ProSiteProfiles Myb-like domain profile. 282 354 IPR001005 -
Cca03g00143 470 MobiDBLite consensus disorder prediction 449 465 - -
Cca03g00143 470 CDD GT1 31 95 - -
Cca03g00143 470 Coils Coil 418 438 - -
Cca03g00143 470 MobiDBLite consensus disorder prediction 1 33 - -
Cca03g00143 470 Gene3D - 32 93 - -
Cca03g00143 470 Gene3D - 284 359 - -
Cca03g00143 470 PANTHER TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE 14 469 - -
Cca03g00143 470 Coils Coil 187 207 - -
Cca03g00143 470 PANTHER - 14 469 - -
Cca03g00143 470 MobiDBLite consensus disorder prediction 302 325 - -
Cca03g00143 470 CDD GT1 282 361 - -
Cca03g00143 470 MobiDBLite consensus disorder prediction 426 448 - -
Cca03g00143 470 MobiDBLite consensus disorder prediction 1 17 - -
Cca03g00143 470 Pfam Myb/SANT-like DNA-binding domain 282 383 IPR044822 -
Cca03g00143 470 Pfam Myb/SANT-like DNA-binding domain 30 117 IPR044822 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00143 Cca-Chr3 2049976 2052133 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00143 159 389 Trihelix Transcription Factor Family AT1G76890 47.917 7.06e-66 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca03g00143 Myb_DNA-bind_4 3.7e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00143 - - gmx:100805632 620.928