Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g00143 | ATGTTGCAAATCTCAACTTTACCAGACAACGCGCCGCGCTCCGACGCCTCCAATCCCCAAGAAGACGCTCACCGGAATTCCCCCGTCCACCGCTGGCCTCGGGAGGAGACAATGGCCTTGCTCAAGATAAGGTCAGACATGGACCTTGCTTTCAGAGATTCAACCCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAACTAGAGGAAGTAGGATATCATCGTAGTGCCAAGAAGTGCAAGGAGAAATTCGAGAACATTTATAAGTACCATAGGAGGACCAAGGAAGGGCGTTGCGGCAAATCCAACGCTGCCAAAACCTATCGATTTTTCGAGCAATTGGAAGCTTTAGACCACTCACTTCCCCAGCCCGACAACAACGATGTTCATGTTGTTATTCGAGAGGCACACGCGGGGGAGCACTCTAGTTCCACCACTTGGAACAACAAGAGTAGGAAGATGAAGATGACGCAGTTCTTGGAGGCGTTGATGAGGGAAGTGATAGAGAAGCAAGAGGTGCTGCAGAAGAATTTCATGGAGGTGTTGGACAAGTGCGAGAGGGAAAGACTGGCCAGGGAGGAAGCGTGGAAGAAGGAGGAGTTGGCAAGGATTAAGAGAGAGCGTGAGCTTCTGGCTCAGGAAAGGTCCATTGCTGCGGCAAAAGATGAAGCAGTGCTTGCGTTTCTTAGAAAGTTCGCAGAAGCACAAGGCACGGTGCAGTTGCTCCACAAAATTCAGGTTCCAAACAAGGACATGCAACAAAATGGGAATGATGTGACTCATATGGATAAGCATCAAGAATGTGGAAATGTTGCTGTGGGGAGTTTGGTGCATGTGACTGCTTCAAGGTGGCCTAAGGATGAAGTTGAGGCTTTGATAAGGTTGAGGACACAGCTAGAGGTGCAGTCacaagggaataataataataataatgataataattctactactaataataatgggtctaaggggcctctttgggaggagatatctttggcaatGAAAAGTCTTGGCTATGATCGCAGTGCCAAGAGATGTAAGGAGAAATGGGAGAACATAAACAAGTACTTCAAGAGGATGAAGGAGAAGAACAAGAGGAAGCCTCAGGATTCCAAAACGTGTCCTTATTACCACCATCTCGAGGCTTTGTATAGTAAAAGGCCTAAGAAGGTGGATGAGTCTGGTGGTTGTGATACTAATAATAATAGTTCTGGGAATGAGTTGAAGCCTGAGGAGTTGTTGTTGCATATCATGGAGAGTCAAGAAGAGAGacaacaacaacaacaacaacaCATGGATGAGTCATCTTCTGAAGATGCTGAGAGAGAGAACACGGATCAGAATGAAGATCAAAGTGGGTATCAGAATCAGACGGTTGATAATAGTCCTGCTTCTATAGCAATTATGAGTTAA | 1413 | 0.4345 | MLQISTLPDNAPRSDASNPQEDAHRNSPVHRWPREETMALLKIRSDMDLAFRDSTPKAPLWEQVSRKLEEVGYHRSAKKCKEKFENIYKYHRRTKEGRCGKSNAAKTYRFFEQLEALDHSLPQPDNNDVHVVIREAHAGEHSSSTTWNNKSRKMKMTQFLEALMREVIEKQEVLQKNFMEVLDKCERERLAREEAWKKEELARIKRERELLAQERSIAAAKDEAVLAFLRKFAEAQGTVQLLHKIQVPNKDMQQNGNDVTHMDKHQECGNVAVGSLVHVTASRWPKDEVEALIRLRTQLEVQSQGNNNNNNDNNSTTNNNGSKGPLWEEISLAMKSLGYDRSAKRCKEKWENINKYFKRMKEKNKRKPQDSKTCPYYHHLEALYSKRPKKVDESGGCDTNNNSSGNELKPEELLLHIMESQEERQQQQQQHMDESSSEDAERENTDQNEDQSGYQNQTVDNSPASIAIMS | 470 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g00143 | 470 | MobiDBLite | consensus disorder prediction | 18 | 33 | - | - | |
Cca03g00143 | 470 | SMART | sant | 28 | 90 | IPR001005 | - | |
Cca03g00143 | 470 | SMART | sant | 280 | 356 | IPR001005 | - | |
Cca03g00143 | 470 | ProSiteProfiles | Myb-like domain profile. | 31 | 88 | IPR001005 | - | |
Cca03g00143 | 470 | MobiDBLite | consensus disorder prediction | 387 | 470 | - | - | |
Cca03g00143 | 470 | ProSiteProfiles | Myb-like domain profile. | 282 | 354 | IPR001005 | - | |
Cca03g00143 | 470 | MobiDBLite | consensus disorder prediction | 449 | 465 | - | - | |
Cca03g00143 | 470 | CDD | GT1 | 31 | 95 | - | - | |
Cca03g00143 | 470 | Coils | Coil | 418 | 438 | - | - | |
Cca03g00143 | 470 | MobiDBLite | consensus disorder prediction | 1 | 33 | - | - | |
Cca03g00143 | 470 | Gene3D | - | 32 | 93 | - | - | |
Cca03g00143 | 470 | Gene3D | - | 284 | 359 | - | - | |
Cca03g00143 | 470 | PANTHER | TRIHELIX TRANSCRIPTION FACTOR GT-2-LIKE | 14 | 469 | - | - | |
Cca03g00143 | 470 | Coils | Coil | 187 | 207 | - | - | |
Cca03g00143 | 470 | PANTHER | - | 14 | 469 | - | - | |
Cca03g00143 | 470 | MobiDBLite | consensus disorder prediction | 302 | 325 | - | - | |
Cca03g00143 | 470 | CDD | GT1 | 282 | 361 | - | - | |
Cca03g00143 | 470 | MobiDBLite | consensus disorder prediction | 426 | 448 | - | - | |
Cca03g00143 | 470 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Cca03g00143 | 470 | Pfam | Myb/SANT-like DNA-binding domain | 282 | 383 | IPR044822 | - | |
Cca03g00143 | 470 | Pfam | Myb/SANT-like DNA-binding domain | 30 | 117 | IPR044822 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g00143 | Cca-Chr3 | 2049976 | 2052133 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g00143 | 159 | 389 | Trihelix Transcription Factor Family | AT1G76890 | 47.917 | 7.06e-66 | 220 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Trihelix | Cca03g00143 | Myb_DNA-bind_4 | 3.7e-19 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g00143 | - | - | gmx:100805632 | 620.928 |