Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00137 ATGAGGTTCCTTCTCCGCAGGCACCTCTGGCATTTCTCAGCGTCCCCAGCTCGCACGCTTCTGCTTCGGCTCCGAGCGTGCGAGCTGTCATCTTCTCCTGACTGCTCCCGAAACGTGAGGGTTTCGGTGTGGTGGGATTTCAAGAACTGCGACGTTCCCGCCGGCGTAGACCCATCGAAGGTTGCCCCCGCAATCACCAAGGCCCTTAGGGCCAACGGGATCAAAGGCCCGCTTCACATTACCGCTTTCGGCGATGTTCTCATGCTCTCCAAGCCCAACCGGGACGCACTCGCTAACACCGGCATTCAATTCACCCACGTTCCTAAAGGTGGAAAGAATAGTGGCAACATTCTTGTTGAAATCATGTTTTGGGTATCCCAAAATCCTCCACCTGCACATCTATTTCTGATATCTGGTGATAGAAGTTTTGCCTGCATATTACACTGGTTAAGAATGAATAATTACAATATCTTGCTTGCTAGTCCAAAGAAGGCTTCTGGTGTTCTCTTTAGTGCAGCAACTATAATGTGGCAATGGTCTTCATTGCTTAAGGGAGAAAACCTTTCTGGAAAACATTTCAACCATCCTCCTGATGGTCCATTTGGTTCTTGGTATGGAAACTTTAAGGTGCCACTTGAAAACCCATTCCTCGCTGCTGAGCCATCTACATCTTTACAGAATGTGGAGATCAATGAACCTTCCTTAGACTTAAAGTCAGGTGCAGTTTCAAAGTCACTTGTACGGCAAGTTAAGCATATATTGAGTTCACATCCAAAAGGGATCTCCATTACAGATCTTCATGCAGAGTTGGCAAAGTGTGATGAGCATTTGGATAAAAGTTTATATGGATTTAGAAGCTTTTCACGTTTTCTATTATCAATTCCACACATACAGCTCCAGCCTTTAGGGAGTGCTAATTTTCGAGTATTTTTGCTTGCATCAGAGTCCCCTGAACCTTTTGACAGCAGTGTTGTCCCATTAACATCATCTTCTGTTAAGAATGAGGAGAGAGGGGGATATGCGGATGGTACTCCCTCAAATGCCACTTTCCGTGCAAGGAGTATGAATGATGATTCAAAATCATTCCAACCAGTCCCTTCGCAAGGCAAAACCATTGGAGAATATGTGGATGGTAAATCATCATTTCCTTCATCGGTTGAAAGACATGAATTTCAGCCCCAAAATGAGTTGCAGAAATATTCTCTGGCTAGTGAGAAGGTTGCGGATGTGGCTGACGCACAAATACCTAAGATTCAACCGCCATCCATGGAAAACAAATTTTCCAAAACTAAGATTGGTTCCTTAAAAACTAGATCTAAAAAGTCATCTGGCAATGACAATTTTAAGTCTGAGGATGCAAGTCATAAAATTGTAGAAAAACATACCACTTCAGGTAGTCACTGTGCTGGAAATGATCACACAACAGTGGAACACAATGGTATTGCAAATTATGACTTGGGAAATTTTAAAGCAAAGAACAAATGTGAGAATCCAACTAAGGCTGATGAAGTTTGTTGCAGCCCATATTCGTCACCAGTTGATAAGAATCTGTCTGAAAAAAGAGTTGACGGAATTGCTGAAACTTATAACAAAAGACCAACATTCTTTAGATGGATTAGAAGTTGGTGGCCATTTTGGAGAAGCAACGCAAAGTTTGATGATTTGGATGCTCATCAGAACAAGGTAGTTAGTCATTTGGAGGATTCTAAGTTATCTGAAATGGACCAGACTGTTAGTCATTTTGAAGAACCCAAGGTATCAGAACCAGACCAGAATGTTATTCATTCTCGGAAGCCTGAGTTGTTTTCTAGTGTCTCCTTTTGGAATGATTTGGAATCTTTTATTTTCACGCCCAAAGGATCACTTATTGTTTCCCAGTCAAAAAGCAGGGGGGATATGGCACATAAATTACAAAATGATGGACCCCTCGTTCTTAGATCTCTCACTCGAAAAGATATCATTCAATTGGTGGAATTGTTAACAGCAGAGAAAAAGTGGTTGGTGGAGATCTCCTCTGAAGCATTTCCCTTTAGGTTAACTCAATCAGTTCAGAAGAACTCATTGATGGATCAATCCCATGGTGCAAATGGCTTGAGATCTGTCTTTCTGAGCAAACTGTCACAGTCCAAGTTGCAAAAGTCATTTGAACATGATGTGGAGAAACACAATCAGAGTATTCCACATACTAGAGTTTCCACAACTGCCTCCGAAATAAAGTATACTGAGAGGTCTAGAAATGATATATTAGAAGATTGTCAGAAACTTGTAAATGAGATATTGAGGGAACACCCAAAGGGATATCGTATCAGTTCTTTTCCAAGACTGTTTGTTGATAGGTATGGTTATCATCTTAATTTACAGAAGCTTGGTTATAAAAAGTTAGCAACCTTACTACAGATAATGCCAGATGTTAAAGTAGATTCCACTTATATTTTTCCTTCTAGTCATGCTGTTAGTGCTTCTGATGGGGAAACTTCTATCCTCAAAACTGAAAACTTTAAAGAAACTTCTGTTCACGCAGTCTCAAATTCAGATGGTGAATTATCTGATTCACCACCAAAAGATGATAACATGGAATCTCCATGGCAGGAATTAGATCGTGCTTCTGTCAACAATTCCCACCAGAGTAATATGGAGTCAAAATTAAGTCAGAAAGTCAAAAAACCAGAATACATCAAAGGTTCCTGTTTATGA 2694 0.4098 MRFLLRRHLWHFSASPARTLLLRLRACELSSSPDCSRNVRVSVWWDFKNCDVPAGVDPSKVAPAITKALRANGIKGPLHITAFGDVLMLSKPNRDALANTGIQFTHVPKGGKNSGNILVEIMFWVSQNPPPAHLFLISGDRSFACILHWLRMNNYNILLASPKKASGVLFSAATIMWQWSSLLKGENLSGKHFNHPPDGPFGSWYGNFKVPLENPFLAAEPSTSLQNVEINEPSLDLKSGAVSKSLVRQVKHILSSHPKGISITDLHAELAKCDEHLDKSLYGFRSFSRFLLSIPHIQLQPLGSANFRVFLLASESPEPFDSSVVPLTSSSVKNEERGGYADGTPSNATFRARSMNDDSKSFQPVPSQGKTIGEYVDGKSSFPSSVERHEFQPQNELQKYSLASEKVADVADAQIPKIQPPSMENKFSKTKIGSLKTRSKKSSGNDNFKSEDASHKIVEKHTTSGSHCAGNDHTTVEHNGIANYDLGNFKAKNKCENPTKADEVCCSPYSSPVDKNLSEKRVDGIAETYNKRPTFFRWIRSWWPFWRSNAKFDDLDAHQNKVVSHLEDSKLSEMDQTVSHFEEPKVSEPDQNVIHSRKPELFSSVSFWNDLESFIFTPKGSLIVSQSKSRGDMAHKLQNDGPLVLRSLTRKDIIQLVELLTAEKKWLVEISSEAFPFRLTQSVQKNSLMDQSHGANGLRSVFLSKLSQSKLQKSFEHDVEKHNQSIPHTRVSTTASEIKYTERSRNDILEDCQKLVNEILREHPKGYRISSFPRLFVDRYGYHLNLQKLGYKKLATLLQIMPDVKVDSTYIFPSSHAVSASDGETSILKTENFKETSVHAVSNSDGELSDSPPKDDNMESPWQELDRASVNNSHQSNMESKLSQKVKKPEYIKGSCL 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00137 897 MobiDBLite consensus disorder prediction 838 897 - -
Cca03g00137 897 ProSiteProfiles OST-type HTH domain profile. 242 313 IPR025605 -
Cca03g00137 897 CDD LOTUS 749 806 - -
Cca03g00137 897 MobiDBLite consensus disorder prediction 421 441 - -
Cca03g00137 897 MobiDBLite consensus disorder prediction 864 880 - -
Cca03g00137 897 Gene3D - 743 810 IPR041966 -
Cca03g00137 897 PANTHER EMB|CAB71880.1 9 881 - -
Cca03g00137 897 CDD PIN_limkain_b1_N_like 40 162 - -
Cca03g00137 897 Pfam NYN domain 40 173 IPR021139 GO:0004540
Cca03g00137 897 ProSiteProfiles OST-type HTH domain profile. 748 822 IPR025605 -
Cca03g00137 897 Gene3D - 237 317 IPR041966 -
Cca03g00137 897 CDD LOTUS 244 297 - -
Cca03g00137 897 MobiDBLite consensus disorder prediction 420 453 - -
Cca03g00137 897 Pfam OST-HTH/LOTUS domain 245 301 IPR025605 -
Cca03g00137 897 Pfam OST-HTH/LOTUS domain 749 807 IPR025605 -
Cca03g00137 897 PANTHER LIMKAIN B LKAP 9 881 IPR024768 GO:0005777|GO:0010468|GO:1903231
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00137 Cca-Chr3 1981184 1985858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00137 39 185 C2H2 Transcription Factor Family AT5G61190 42.953 4.28e-34 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00137 - - ccaj:109795685 1805.8