Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00136 ATGAGGCTCGTTCTCCGAAAGAAGCAGTTATTGGCGCTCGGTGTTGGGGTTCAGGCGCGGCAGTGGTCATCGTGTTACAGTGAATCGCGAAATGTGAAGGTTTCGGTGTGGTGGGATTTCGAGAACTGCCAGGTGCCGGTGGGGATGGATGCCATGGATGTGGCCCCAGCAATCACCAAGGCTGTCAGAGCCCATGGGATTAAGGGACCTCTTCGAATCAATGCTTTCGGCGATGTTCTGCAATTGTCCAGACCCAACCAGCTCGCACTTGCTCACACCGGCATTCATTTCACCCATATTCCTGGTGGAAAGAACAGCGCCGATAGGTTTCTTCTTGTTGATCTTATGGATTGGGTTACTCAAAATCCTCCGCCTGCACATCTCTTTCTGATATCTGGTGATGGAGACTTTGCAGGAATGTTACACCGTTTAAGAATGAGTAATTACAATATATTGCTTGCTAGATCGGAGAATGCTCCTGAAGTTCTATGCAGTGCAGCAACTATAATATGGCAATGGTCTTTATTATTAAAGGGGGAATATCTTTCTGGAAAACATTTTAACCATCCTCCTGATGGTTTACTTGGTTCTTGGTATGGAAATTATAAGGTGGCTCTTGAAAAACCGTTCTCAGCTGATGAGCAGTCCACATCTTCACAAAAAGTGGAAATATATGAACATTCCTTAGATTTACACAATGATCCAAAAGAAGTTGAAAGACAGATTTGGCATATATTGAGATCACATCCAGAAGGTATGTCAATTGTAGATCTTCGTGCAGAATTGAAGAAACGTAAGGTGTCTTTCAGTAGAAGCTTTTGTGGACATAAAACATTTTCTCGCTTACTATTATCAATGCCACATGTAAAACTCAAGAATTTACGTGAAGGTAAATTTCATGTATGTCTGGTCCCCACAGAATCCCCTGGAACTGCTGTAGAATCAGTATTATCTGCTATTCAGATTGATGAGAAGGGATCTACAGCAACTCCAAAGCTAAATGGTGAGGATAAAAATAAGATTAGAGAAGCATATGAGACACCGTTAACTGCCTCATCTCATGAAAGGAGTATGGATGAGGATTCTAATTCATTCCAACTGGTCACTTCACAAGTCAAACACATGGGAGAATATGTAGATGCTAAATCATCACTTTCATTGGTTGAAAGAAGTGCACCTCAGCCTCCAAATGAGTTGCAGAAATCTTCTGTGTGTAGTGGGAAGGTTGTAGATATGACTACTGAACAACTGTCAAATATTCAATCACAACTCAAGGACAACCAAGTTCCCAAAACTAAGCCAGATTTCTTAAAAGTCAGTTCTAAAAACTCATCTGATGATGACGTTATTGGGCCTGAAGATGCAAGTCATAAAGTTCAGGTAAAATACATGACTTCAAGGAATCATTCTGCTGGAAATAATCAGATAGCAGTGGAAGACATTAGTACTGCAAATTATGAGTCTGGAATTTTTAGTGCAACGAATGAATATGAGAACCCAACTAGAAAGGAGGTTGATGAAGTTTGTCACAGCCCATATTCTTTAACAGTTGATGACTCTCTGGATGATAAAAAACCTGTTGGAAGTGATGAAACTTATCAGAAAGGTCCAACATTCTTTGACAGGATCAGAAGCTTGTGGCAATTTTGGAAAGGCAATGCAAAATCTGGTGATTCAAGTGCTCAACAGAACAAGGTGGTTAGTCATTTTGAGGATTCTTACTCATCTGAACAAGACCAGACAGTCCAGAGTGTTGGTGATTTTGAAGAATCCAAGTTATCAGAACTGGAACAGAATGTCATTTGTTCTCGAAAACCTGAGTTGTTTTCTAGTGGTTCCTTTTGGAATGACATGGAATCTTTTATTTTCACGCTCAAAGGATTATTTATTGTTTCCCAGTCAAAAAACAGGGAGGATATGGCACATAAATTACAAAAGGATGGACCCCTGGTTTTTAGATCTCTCACTGAAAAAGATATCCTTCAATTGGTGGAATCGTTAATATCAGAAAAAAAGTGGTTGGAGGAAAGGCCCTCCCTGATATTTCCTTTTAGGCTAACTCAACCAATTCAGAACTCATTGATGTGCCAATCTCATAGTGCAAATGACTTGTGTTCTCTCTCTCTGAGCAGAGCATCACAGTCCAAGATGGACAAATCATCGGAACATAATGTGGAGAAACACAATCAGAGTATTCCTCATACTAGAGTTTCTACAACTGCAACTGAGACTACATATTCAGAGAGTTTTAGGCATGATATATTAGATGATTGTCAGAAACTTGTGAGTGAGATATTGAGCGAACACCCAGAAGGATATAATTTCAGTTCTTTCCCAAGATTGTTTGTTGATAGGTATGGCTATCATCTTGATTTACAGGAGCTTGGTTACTCAAAGTTGGCATTCTTACTACGGATAATGCCGGAAGTTAAAGTAGAGTCCAGTTATATTTATCCTTCTCTTCCTGCTGTTTGTGCATCTGAAGGAGAAACTTTTAATCTCAAAACTCAAGTAACCAATGATCATGCAGCCTCGAACTCAGATAGTGAATTATCTGGTTCAGCTTCCCAAGTTAATAATATGGAATCTCCATGGGAGGAATTAGGTCCTGTTTCTGTCAACAATTACAACCAGAGTAATCTGGAGTCAAAATTAAGTCAGAAAGCCAAAGAACTGGATACATCAAAGCGTCCTCATTATGAACCCATTGTCTCAGATTATGATTCTTCTGAATCTGAAGGAGACAGCTCTTATTTAAATCACCCAGAAGAGCAAGGAAAGTCAAAATGTAATGGACAAGAAAGTTATCTTTTGCAACGTCAGGAGTTGATGCAAAGCAACAAGGAAGGAAATAATAGTGTTAAGAAGTCAGACATGGTTGACGTTTCGGGCATTTTTCTGGCTGATCTTTTTGATTCATCCACCGAGTCAACAGAGGGTACCCTTTCGAAAGAGAAACCAAGATCTCATAGGGGTACTCTTTCCAAAGAGATGCCGAAATCTCAAAAGAACTATTCATTTGTTGCTGACCCTGTCATGCCGAACAAGGAAAGGATGATTCATGGGATATTAGATGACTTAAAAAAAGATGAGTCAAAGATGCAACAATGA 3111 0.3979 MRLVLRKKQLLALGVGVQARQWSSCYSESRNVKVSVWWDFENCQVPVGMDAMDVAPAITKAVRAHGIKGPLRINAFGDVLQLSRPNQLALAHTGIHFTHIPGGKNSADRFLLVDLMDWVTQNPPPAHLFLISGDGDFAGMLHRLRMSNYNILLARSENAPEVLCSAATIIWQWSLLLKGEYLSGKHFNHPPDGLLGSWYGNYKVALEKPFSADEQSTSSQKVEIYEHSLDLHNDPKEVERQIWHILRSHPEGMSIVDLRAELKKRKVSFSRSFCGHKTFSRLLLSMPHVKLKNLREGKFHVCLVPTESPGTAVESVLSAIQIDEKGSTATPKLNGEDKNKIREAYETPLTASSHERSMDEDSNSFQLVTSQVKHMGEYVDAKSSLSLVERSAPQPPNELQKSSVCSGKVVDMTTEQLSNIQSQLKDNQVPKTKPDFLKVSSKNSSDDDVIGPEDASHKVQVKYMTSRNHSAGNNQIAVEDISTANYESGIFSATNEYENPTRKEVDEVCHSPYSLTVDDSLDDKKPVGSDETYQKGPTFFDRIRSLWQFWKGNAKSGDSSAQQNKVVSHFEDSYSSEQDQTVQSVGDFEESKLSELEQNVICSRKPELFSSGSFWNDMESFIFTLKGLFIVSQSKNREDMAHKLQKDGPLVFRSLTEKDILQLVESLISEKKWLEERPSLIFPFRLTQPIQNSLMCQSHSANDLCSLSLSRASQSKMDKSSEHNVEKHNQSIPHTRVSTTATETTYSESFRHDILDDCQKLVSEILSEHPEGYNFSSFPRLFVDRYGYHLDLQELGYSKLAFLLRIMPEVKVESSYIYPSLPAVCASEGETFNLKTQVTNDHAASNSDSELSGSASQVNNMESPWEELGPVSVNNYNQSNLESKLSQKAKELDTSKRPHYEPIVSDYDSSESEGDSSYLNHPEEQGKSKCNGQESYLLQRQELMQSNKEGNNSVKKSDMVDVSGIFLADLFDSSTESTEGTLSKEKPRSHRGTLSKEMPKSQKNYSFVADPVMPNKERMIHGILDDLKKDESKMQQ 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00136 1036 Pfam NYN domain 33 167 IPR021139 GO:0004540
Cca03g00136 1036 PANTHER LIMKAIN B LKAP 25 969 IPR024768 GO:0005777|GO:0010468|GO:1903231
Cca03g00136 1036 ProSiteProfiles OST-type HTH domain profile. 754 828 IPR025605 -
Cca03g00136 1036 Pfam OST-HTH Associated domain 636 690 IPR025677 -
Cca03g00136 1036 MobiDBLite consensus disorder prediction 976 1013 - -
Cca03g00136 1036 Pfam OST-HTH/LOTUS domain 755 814 IPR025605 -
Cca03g00136 1036 Pfam OST-HTH/LOTUS domain 235 298 IPR025605 -
Cca03g00136 1036 MobiDBLite consensus disorder prediction 887 930 - -
Cca03g00136 1036 Gene3D - 229 309 IPR041966 -
Cca03g00136 1036 CDD LOTUS 755 812 - -
Cca03g00136 1036 MobiDBLite consensus disorder prediction 887 906 - -
Cca03g00136 1036 CDD PIN_limkain_b1_N_like 33 154 - -
Cca03g00136 1036 CDD LOTUS 235 303 - -
Cca03g00136 1036 MobiDBLite consensus disorder prediction 979 997 - -
Cca03g00136 1036 MobiDBLite consensus disorder prediction 840 860 - -
Cca03g00136 1036 ProSiteProfiles OST-type HTH domain profile. 234 305 IPR025605 -
Cca03g00136 1036 PANTHER EMB|CAB71880.1 25 969 - -
Cca03g00136 1036 Gene3D - 749 817 IPR041966 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00136 Cca-Chr3 1973481 1977824 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00136 32 179 C2H2 Transcription Factor Family AT5G61190 44.966 8.27e-36 145