Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g00135 | ATGGATTTGGACGATTTCCGATCCATATTGGACACCGCGGGCGTCGACGTCTGGATGTTCATcgacgccgcaatcgccgtcgcctccgccgactctgccgccgAATTGAGGCGTCGCCGAGACGGCATAGTCGAGCGCCTCTACGCCGCCACGGCACCGCCGCCGCGCTGCCGGAATTGCGACAACGGCCACCGCCTCAACGGCCACCAAGTCAACAAACAGATTAGCCCTAGCCCTAGCCCCGAACGACAACCGCAACATCGTGCCACCGCTTCCCCCGCCACGCCGCAGTCTGTcgacaacgacaacgccgacgacggcggcgaggaTTTAGATCCTTACGGCGGCTTGTTCGACGACGAGCAGAAGAAGGTTCTGGAAATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCCTTGGTGGAGTTGCTGCAAAACCTCGCGGACATGGATATTACATTTCAAGCGTTAAAGGAGACTGACATCGGGAGACACGTGAATCGGTTACGGAAACATCCTTCTAACGACGTTCGGCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGACGAATCGACAGGGAGGGAGCAACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAGCCACCCAAAATGGGCATCAGCAGATTCCTGATTTCGCATACTCGCCAAATCCACACAATGGGAGCTCTGGCTCTGACCGGAACAACTCAGAAGTAGAACACAAACCCAAAGTAATTCCTCGCCCAAAACCCACGCCATCACCCTCAGTTTCCACCCCTGCTTCCGCCACTCAAAACAGACAGAGAGAGAGCAATTTTGACGCGGATGCAAGGCTTGCTTCCGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAggtggtggtggtggtggtTCTCAGGGAAGGCACTGGTGA | 1047 | 0.4814 | MDLDDFRSILDTAGVDVWMFIDAAIAVASADSAAELRRRRDGIVERLYAATAPPPRCRNCDNGHRLNGHQVNKQISPSPSPERQPQHRATASPATPQSVDNDNADDGGEDLDPYGGLFDDEQKKVLEIKEQLEEPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKTNRQGGSNTLMADGDSPVQKATQNGHQQIPDFAYSPNPHNGSSGSDRNNSEVEHKPKVIPRPKPTPSPSVSTPASATQNRQRESNFDADARLASARRRLQENYKEAENAKRQRTIQVMDIHELPKSKPKNAFFGKNKGGGGGGSQGRHW | 348 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g00135 | 348 | MobiDBLite | consensus disorder prediction | 65 | 102 | - | - | |
Cca03g00135 | 348 | ProSiteProfiles | TFIIS N-terminal domain profile. | 120 | 197 | IPR017923 | - | |
Cca03g00135 | 348 | MobiDBLite | consensus disorder prediction | 203 | 286 | - | - | |
Cca03g00135 | 348 | MobiDBLite | consensus disorder prediction | 318 | 348 | - | - | |
Cca03g00135 | 348 | SMART | TFS2_5 | 125 | 196 | IPR003617 | GO:0005634 | |
Cca03g00135 | 348 | MobiDBLite | consensus disorder prediction | 52 | 116 | - | - | |
Cca03g00135 | 348 | SUPERFAMILY | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 123 | 207 | IPR035441 | - | |
Cca03g00135 | 348 | Coils | Coil | 288 | 315 | - | - | |
Cca03g00135 | 348 | MobiDBLite | consensus disorder prediction | 203 | 246 | - | - | |
Cca03g00135 | 348 | CDD | TFIIS_I | 122 | 195 | - | - | |
Cca03g00135 | 348 | Gene3D | Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 | 119 | 207 | IPR035441 | - | |
Cca03g00135 | 348 | Pfam | TFIIS helical bundle-like domain | 145 | 194 | IPR017923 | - | |
Cca03g00135 | 348 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED | 1 | 348 | IPR044790 | - | |
Cca03g00135 | 348 | PANTHER | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED | 1 | 348 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g00135 | Cca-Chr3 | 1954127 | 1957320 | Dispersed/Wgd |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | IWS1 | Cca03g00135 | Med26 | 1.4e-12 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g00135 | - | - | gmx:100790582 | 514.612 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca09g02227 | 09 | 47471556 | 47474111 | Cca03g00135 | 03 | 1954127 | 1957320 | PCT |