Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00135 ATGGATTTGGACGATTTCCGATCCATATTGGACACCGCGGGCGTCGACGTCTGGATGTTCATcgacgccgcaatcgccgtcgcctccgccgactctgccgccgAATTGAGGCGTCGCCGAGACGGCATAGTCGAGCGCCTCTACGCCGCCACGGCACCGCCGCCGCGCTGCCGGAATTGCGACAACGGCCACCGCCTCAACGGCCACCAAGTCAACAAACAGATTAGCCCTAGCCCTAGCCCCGAACGACAACCGCAACATCGTGCCACCGCTTCCCCCGCCACGCCGCAGTCTGTcgacaacgacaacgccgacgacggcggcgaggaTTTAGATCCTTACGGCGGCTTGTTCGACGACGAGCAGAAGAAGGTTCTGGAAATTAAAGAGCAACTCGAAGAGCCTGACCAGTCTGAAGATTCCTTGGTGGAGTTGCTGCAAAACCTCGCGGACATGGATATTACATTTCAAGCGTTAAAGGAGACTGACATCGGGAGACACGTGAATCGGTTACGGAAACATCCTTCTAACGACGTTCGGCGATTGGTGAAGCTGCTTGTCAGGAAGTGGAAGGAAATTGTGGATGAGTGGGTGAAGACGAATCGACAGGGAGGGAGCAACACTCTGATGGCTGATGGAGACTCGCCTGTGCAGAAAGCCACCCAAAATGGGCATCAGCAGATTCCTGATTTCGCATACTCGCCAAATCCACACAATGGGAGCTCTGGCTCTGACCGGAACAACTCAGAAGTAGAACACAAACCCAAAGTAATTCCTCGCCCAAAACCCACGCCATCACCCTCAGTTTCCACCCCTGCTTCCGCCACTCAAAACAGACAGAGAGAGAGCAATTTTGACGCGGATGCAAGGCTTGCTTCCGCGAGAAGGAGGCTTCAAGAGAACTACAAAGAGGCTGAAAATGCCAAAAGGCAAAGAACGATTCAGGTGATGGACATCCATGAGTTACCAAAGTCAAAACCCAAGAATGCCTTCTTTGGGAAGAACAAAggtggtggtggtggtggtTCTCAGGGAAGGCACTGGTGA 1047 0.4814 MDLDDFRSILDTAGVDVWMFIDAAIAVASADSAAELRRRRDGIVERLYAATAPPPRCRNCDNGHRLNGHQVNKQISPSPSPERQPQHRATASPATPQSVDNDNADDGGEDLDPYGGLFDDEQKKVLEIKEQLEEPDQSEDSLVELLQNLADMDITFQALKETDIGRHVNRLRKHPSNDVRRLVKLLVRKWKEIVDEWVKTNRQGGSNTLMADGDSPVQKATQNGHQQIPDFAYSPNPHNGSSGSDRNNSEVEHKPKVIPRPKPTPSPSVSTPASATQNRQRESNFDADARLASARRRLQENYKEAENAKRQRTIQVMDIHELPKSKPKNAFFGKNKGGGGGGSQGRHW 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00135 348 MobiDBLite consensus disorder prediction 65 102 - -
Cca03g00135 348 ProSiteProfiles TFIIS N-terminal domain profile. 120 197 IPR017923 -
Cca03g00135 348 MobiDBLite consensus disorder prediction 203 286 - -
Cca03g00135 348 MobiDBLite consensus disorder prediction 318 348 - -
Cca03g00135 348 SMART TFS2_5 125 196 IPR003617 GO:0005634
Cca03g00135 348 MobiDBLite consensus disorder prediction 52 116 - -
Cca03g00135 348 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 123 207 IPR035441 -
Cca03g00135 348 Coils Coil 288 315 - -
Cca03g00135 348 MobiDBLite consensus disorder prediction 203 246 - -
Cca03g00135 348 CDD TFIIS_I 122 195 - -
Cca03g00135 348 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 119 207 IPR035441 -
Cca03g00135 348 Pfam TFIIS helical bundle-like domain 145 194 IPR017923 -
Cca03g00135 348 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 348 IPR044790 -
Cca03g00135 348 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26C-RELATED 1 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00135 Cca-Chr3 1954127 1957320 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca03g00135 Med26 1.4e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00135 - - gmx:100790582 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca09g02227 09 47471556 47474111 Cca03g00135 03 1954127 1957320 PCT