Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00129 ATGGACTTCGACGAGTACGATTATTTGGAGAAGACAGTGGAGGAGCAAGAGGACAGAGACTCGAGCAGGAGGAAGAAAGAGAGCGGTGAGAAGAGCGAAAGAAGCTACCGGAAGCGCGAGGAGATCGACGACGGCGCTGACGAGAGGAGGAGCAAGAGGTCAAGGGGCGACGACGAGAATGGCTCCAGGAAGGAGAGAGATCGCGAAGAACGCGACAAGGAGCGCCGCAGGAGTAGCagagacagagacagggatggagagagaagtagcagagacagggacagggaaaaggagagagacaaagagagggatcggagggacagagataaagagagggagaagagggagaaggaaagggaaaaggaaagagaaagagagagagaaagaagggatagagaaagggaggagagagagagGTCTCGGAGGAGCAGAAGTCGTTCTGAGCGAGAAAGAGATAGAGAAAGGGATTTCGACACCAGAGATGGCCGGAGATTTAGGGACAAGAAAGAGGCAGCAGAGCCTGAGGCAGATCCAGAACGGGATCAGAGAACTGTATTTGCTTATCAGATGCCCTTAAAGGCATCAGAGAGGGATGTTTATGAATTCTTCTCAAAAGCGGGCAAGGTGAGGGATGTCCGTCTGATCATGGATAGGAACTCCAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCAATGTCAGTGCCAATGGCAATTGCCCTCTCTGGCCAGCTTCTTCTAGGACAACCTGTAATGGTCAAACCTTCTGAGGCTGAAAAGAACCTTGTCCAATCTAATACTACTAGTGGAGCTGCTGGGGTAGTAGGACCATACGGAGCTGTGGACAGAAAACTGTATGTGGGGAACCTTCACTTCAACATGACAGAGGGTCAATTGAGAGAGATTTTTGAGCCATTTGGTCCAGTGGAGCTTGTGCAGCTGCCTCTTGACTTGGAGACGGGACATTGCAAGGGCTTTGGGTTTGTTCAATTTGCCCATCTTGAGCATGCCAAGGCTGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCTGTAACTGATCATGTTGGAAACCAAGATACAACTGCAAAATCTGCAGACTTTGATGATGATGAAGGTGGTTTGGCTTTAAATGCCCAATCAAGAGCATTGCTTATGCAGAAGCTGGACCGCTCTGGCATTGCTGCAAGCATTGGTCTGCCTGTTGTCAATGGGTCAGCTCCTGCTCAACAGGCTATTATGCCTATTGGTAATCCAGGTATAATACCAGCTCCAGCTGTCCCAACACAAATTATGCCTACCCCAGTGATTGAACCTGTTGGAAACCCCACTGAGTGTTTACTGTTGAAGAATATGTTTGATCCCAACACTGAGACAGAACCAGATTTTGATCTAGACATTAAAGAGGATGTAGAAGAAGAATGTTCCAAATATGGACGGGTGAAGCATATCTATGTTGACAAAAGAAGTGCAGGATTTGTGTATTTGCAGTTTGAAACGGTGGAAGCAGCAAGTGCTGCTCAACGTGCAATGCACACGAGGTGGTTTGCAGGCAGAATGATTTCTGCTATCTTCATGCAACCTCAGATATATGAAGCCAAGTTTAAAGGGGACGCATGA 1647 0.4226 MDFDEYDYLEKTVEEQEDRDSSRRKKESGEKSERSYRKREEIDDGADERRSKRSRGDDENGSRKERDREERDKERRRSSRDRDRDGERSSRDRDREKERDKERDRRDRDKEREKREKEREKERERERERRDREREERERSRRSRSRSERERDRERDFDTRDGRRFRDKKEAAEPEADPERDQRTVFAYQMPLKASERDVYEFFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIALSGQLLLGQPVMVKPSEAEKNLVQSNTTSGAAGVVGPYGAVDRKLYVGNLHFNMTEGQLREIFEPFGPVELVQLPLDLETGHCKGFGFVQFAHLEHAKAAQSLNGKLEIAGRTIKVSSVTDHVGNQDTTAKSADFDDDEGGLALNAQSRALLMQKLDRSGIAASIGLPVVNGSAPAQQAIMPIGNPGIIPAPAVPTQIMPTPVIEPVGNPTECLLLKNMFDPNTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLQFETVEAASAAQRAMHTRWFAGRMISAIFMQPQIYEAKFKGDA 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00129 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 285 363 IPR000504 GO:0003723
Cca03g00129 548 Coils Coil 101 150 - -
Cca03g00129 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 459 537 IPR000504 GO:0003723
Cca03g00129 548 CDD RRM2_RBM23_RBM39 287 359 - -
Cca03g00129 548 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 378 472 IPR029123 -
Cca03g00129 548 Gene3D - 107 270 IPR012677 -
Cca03g00129 548 PANTHER CC1-LIKE SPLICING FACTOR 1 547 - -
Cca03g00129 548 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 1 547 - -
Cca03g00129 548 SUPERFAMILY RNA-binding domain, RBD 176 264 IPR035979 GO:0003676
Cca03g00129 548 SMART rrm1_1 455 533 IPR000504 GO:0003723
Cca03g00129 548 SMART rrm1_1 286 359 IPR000504 GO:0003723
Cca03g00129 548 SMART rrm1_1 184 256 IPR000504 GO:0003723
Cca03g00129 548 CDD RRM3_RBM39_like 453 535 - -
Cca03g00129 548 MobiDBLite consensus disorder prediction 12 182 - -
Cca03g00129 548 Gene3D - 450 547 IPR012677 -
Cca03g00129 548 SUPERFAMILY RNA-binding domain, RBD 284 362 IPR035979 GO:0003676
Cca03g00129 548 SMART rrm2_1 460 533 IPR003954 GO:0003676
Cca03g00129 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 252 IPR000504 GO:0003723
Cca03g00129 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 477 530 IPR000504 GO:0003723
Cca03g00129 548 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 287 357 IPR000504 GO:0003723
Cca03g00129 548 Gene3D - 281 377 IPR012677 -
Cca03g00129 548 MobiDBLite consensus disorder prediction 1 182 - -
Cca03g00129 548 TIGRFAM SF-CC1: splicing factor, CC1-like family 69 544 IPR006509 GO:0003723|GO:0005634|GO:0006397
Cca03g00129 548 CDD RRM1_RBM39_like 184 256 - -
Cca03g00129 548 SUPERFAMILY RNA-binding domain, RBD 451 535 IPR035979 GO:0003676
Cca03g00129 548 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 183 260 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00129 Cca-Chr3 1833493 1840568 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00129 257 528 Eukaryotic Initiation Factors Gene Family AT4G34110 24.333 7.89e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00129 K13091 - gmx:100802446 725.317
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00129 03 1833493 1840568 Cca03g00129 03 1833493 1840568 ECH
Cca09g02220 09 47404958 47412029 Cca03g00129 03 1833493 1840568 PCT