Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00125 ATGCAAAGGCTATTGCCCGGTTTGAATAGGGAGAGAGAGATGTCTGCTATGGTCTCAGCTTTGACCCACGTCGTCTCCGGAGATGTGCCACCCGCTGATCATCATGTTGTCGTTACACCTAATTCTGTTGCCACTGCCACCTCTTCTCTCAAGAGAAGTAGACAACACCACACACCCTTCTCAAAAAGTGCAGAATGTTCAAACAGCAGCACAAGGGAAATGGAGAATGCTGTGTATGAATACAGAACAACgagaagagagaacgagaatgtgagtagagaagagggaaggagaaaatacagaggagtgagaCAAAGGCCATGGGGGAAGTGGGCTGCAGAAATAAGAGACCCATTCAAAGCGGCGAGGGTGTGGTTAGGGACATTTGACACGGCTGAGGCTGCTGCAAGGGCATACGATGAAGCTGCCCTTCGTTTTAGAGGGAACAAGGCCAAACTCAACTTTCCTGAGAATGTCACTCTCCGACAACAACCTCAACCTCAACCTCAATTTAGTATCTCCGATTCTTCAACATCTCTTGTTTCCGTTACAACGTCCACCGACCCTGTTGTTCACACCACACCTCTTATCCCTTATCAGCCTTCTTCTACCGACTATTACGACTGTTTTCAACTCTCGCCCTTCCCCACCAACCTTTATCAGGATCACATGTTTGTCACGTCTTCCATGGcttctcatcttcaatcttcttcttcttcttcttcaacttctgcgtttgcttcgtctctaacttctcctCAGGACACTTCGCTTTCTTCTTTCTATACTACCCAGTTGCCGCCATGGtctgcctctgcctctgcctctgcctctgcTCATAGCTCTTCTTCATCCGGATGA 861 0.3949 MQRLLPGLNREREMSAMVSALTHVVSGDVPPADHHVVVTPNSVATATSSLKRSRQHHTPFSKSAECSNSSTREMENAVYEYRTTRRENENVSREEGRRKYRGVRQRPWGKWAAEIRDPFKAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFPENVTLRQQPQPQPQFSISDSSTSLVSVTTSTDPVVHTTPLIPYQPSSTDYYDCFQLSPFPTNLYQDHMFVTSSMASHLQSSSSSSSTSAFASSLTSPQDTSLSSFYTTQLPPWSASASASASAHSSSSSG 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00125 286 SUPERFAMILY DNA-binding domain 99 157 IPR016177 GO:0003677
Cca03g00125 286 Pfam AP2 domain 99 148 IPR001471 GO:0003700|GO:0006355
Cca03g00125 286 MobiDBLite consensus disorder prediction 47 72 - -
Cca03g00125 286 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 11 283 - -
Cca03g00125 286 PRINTS Ethylene responsive element binding protein signature 100 111 IPR001471 GO:0003700|GO:0006355
Cca03g00125 286 PRINTS Ethylene responsive element binding protein signature 122 138 IPR001471 GO:0003700|GO:0006355
Cca03g00125 286 ProSiteProfiles AP2/ERF domain profile. 99 156 IPR001471 GO:0003700|GO:0006355
Cca03g00125 286 Gene3D AP2/ERF domain 98 158 IPR036955 GO:0003700|GO:0006355
Cca03g00125 286 PANTHER DNA-BINDING DOMAIN 11 283 IPR044808 GO:0003700|GO:0009873
Cca03g00125 286 CDD AP2 99 158 IPR001471 GO:0003700|GO:0006355
Cca03g00125 286 SMART rav1_2 99 162 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00125 Cca-Chr3 1763054 1764558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00125 4 197 AP2-EREBP Transcription Factor Family AT5G64750 43.966 3.22e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g00125 AP2 3.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00125 - - gmx:100796247 285.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00125 03 1763054 1764558 Cca03g00125 03 1763054 1764558 ECH