Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00121 ATGGGATGCATTTGTGGCAAGTTTTCTCCCCCTCGCAGTGCTGAGAGGCCGAAGCGGCAAGTGAGGAGAGAGGGTTCCAGGACACGTTCCTCTAAGCATGTGGGAGAGAGGGTTAAGAGGGAGACTCAGAGACAAAGAGTAAGTGTGCATGCTAAGAAGGGTGAAGAAAATGCTTCTGGAGGAGGAGAAAAGGAAAAACCGGTTGCTAGAAAAGATAAGAGTAAGGTAGTGGAAGATGTTGCTGGAGAAAATAGTAAGAGTAAAGTTGGGGAGGTTAGAGAGAAGAAGATGGCCAAATATGAATTTGTGGGTGGGTGGCCAAAGTGGTTAATTGATAACATCCCCACAGATGTTTTGGCTAATATTGTTCCAAAGAGTGCTGATTCCTATGAAAAACTTGCCAAGATAGGACGTGGAACATATAGCAATGTGTACAAAGCAAGAGAAAAGGGCACAGGAAAGATCGTTGCTTTGAAGAAGGTGCGGTTTGACACATCGGATACTGAAAGCATTAAGTTTATGGCGAGAGAGATCAGGATACTGCAGATGCTGGATCATCCCAATGTCATCAAACTTAGAGGACTAGCAACATCAAGGATGCAGTATAGTCTTTATCTAGTTTTTGATTTCATGCAATCTGATCTGACCCGAATTATCACCCGACCCGGTGAGAAACTCACCGAACCGCAGATCAAGTGCTATATGCAGCAGCTGCTTTCTGGGCTGCAACACTGCCACGACAGGGGAATTATGCATCGAGATATTAAGGCTTCTAATTTGTTAATAGACAGAAGAGGGGTGCTGAAAATTGCAGATTTTGGGCTTGCAACTTCCATTGAAGCAGAAAGGCCTCTTACAAACAGAGTGGTGACACTTTGGTATAGAGCTCCAGAACTTCTTTTGGGTTCAACCGATTATGGATATAGCATCGATCTCTGGAGTGCAGGGTGCTTGTTGGCTGAGATGTTTGTTGGAAGGCCAATTATGCCTGGCAGAACAGAGGTTGAGCAGATTCACATGATCTTCAAACTGTGTGGTTCCCCTTCAGAGGATTACTACAAAAAACTGAAGCTAACAACAAGCTTCCGGCGGCCTCCACAGCATTACAAACCCAGTTTCCAAGAAAACTTCCTCAAGTTTCCTTCCTCTTCGCAAGGTCTCTTGGCTACACTTCTTGATCTCAACCCTGACCTACGTGGCACTGCTGCTTCTGCTCTCCAAACTGAATTCTTCAAATCTAGTCCATTACCATGTGACCCTTCAGCTTTGCCAGTAATCTACAAAGACGAGGATGAACGCTTACAAACTAAGAAAAGCAAAAGGCAAAGGGTTTCTAAAAGAGGGCAACAATCTCAAACGACTAGTAGTGATGCTACTCAGTCAGGAAAGAACCAAATTGCTGAACAAACCCTTGGAGATACAGAATCATCAAAAGAGAAGCAAATTGAACATCAAAAGCAAGGTCATGAAACGGGGAATAGTGGTAGCAGCACATCATCAGGGTCAAGACTATTTTTGACTGAAGGGAACAGCAGCATGAACACATCTTTATCCCCATTTTCTCTCTCTAGTGGTAGTGTGAGAAAGTCCCCCAAAACATAG 1602 0.4419 MGCICGKFSPPRSAERPKRQVRREGSRTRSSKHVGERVKRETQRQRVSVHAKKGEENASGGGEKEKPVARKDKSKVVEDVAGENSKSKVGEVREKKMAKYEFVGGWPKWLIDNIPTDVLANIVPKSADSYEKLAKIGRGTYSNVYKAREKGTGKIVALKKVRFDTSDTESIKFMAREIRILQMLDHPNVIKLRGLATSRMQYSLYLVFDFMQSDLTRIITRPGEKLTEPQIKCYMQQLLSGLQHCHDRGIMHRDIKASNLLIDRRGVLKIADFGLATSIEAERPLTNRVVTLWYRAPELLLGSTDYGYSIDLWSAGCLLAEMFVGRPIMPGRTEVEQIHMIFKLCGSPSEDYYKKLKLTTSFRRPPQHYKPSFQENFLKFPSSSQGLLATLLDLNPDLRGTAASALQTEFFKSSPLPCDPSALPVIYKDEDERLQTKKSKRQRVSKRGQQSQTTSSDATQSGKNQIAEQTLGDTESSKEKQIEHQKQGHETGNSGSSTSSGSRLFLTEGNSSMNTSLSPFSLSSGSVRKSPKT 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00121 533 MobiDBLite consensus disorder prediction 446 472 - -
Cca03g00121 533 MobiDBLite consensus disorder prediction 12 82 - -
Cca03g00121 533 SMART serkin_6 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00121 533 MobiDBLite consensus disorder prediction 1 82 - -
Cca03g00121 533 CDD STKc_CDK9_like 130 411 - -
Cca03g00121 533 ProSiteProfiles Protein kinase domain profile. 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00121 533 Gene3D Transferase(Phosphotransferase) domain 1 213 456 - -
Cca03g00121 533 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524
Cca03g00121 533 ProSitePatterns Serine/Threonine protein kinases active-site signature. 250 262 IPR008271 GO:0004672|GO:0006468
Cca03g00121 533 MobiDBLite consensus disorder prediction 432 533 - -
Cca03g00121 533 Pfam Protein kinase domain 130 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00121 533 SUPERFAMILY Protein kinase-like (PK-like) 123 419 IPR011009 -
Cca03g00121 533 MobiDBLite consensus disorder prediction 488 533 - -
Cca03g00121 533 MobiDBLite consensus disorder prediction 473 487 - -
Cca03g00121 533 PANTHER CYCLIN-DEPENDENT KINASE 76 503 - -
Cca03g00121 533 PANTHER CELL DIVISION PROTEIN KINASE 76 503 - -
Cca03g00121 533 Gene3D Phosphorylase Kinase; domain 1 118 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00121 Cca-Chr3 1703598 1707637 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00121 125 443 Core Cell Cycle Gene Families AT5G10270 46.450 1.91e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca03g00121 Pkinase 7.7e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00121 K08819 - gmx:100782603 783.097
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00121 03 1703598 1707637 Cca03g00121 03 1703598 1707637 ECH