Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00117 ATGAAAGCCCTGTACAGAAGCTCTCTCTTGGTCCTCCTCTCTTTGGCCATCTTCTTCACTTTGATAGGCGCTGCTTCCAGAGACCCCACTCCGCAACTCATAAGCTTCAAGAACTCTCTACCCAACCCGACCCTGCTCCCCAACTGGCTCCCAAACCAAAACCCCTGTACCTTCACCCGAATCACCTGCAACCAGACCCACCTCACTTCCATAGACCTCACCTCCATCCCACTCAGCACCGACCTCACCGTCGTAGCAACCTACCTCCTCACCCTCGACCACCTCCAGTTCATCTCCCTCAAATCCACCAACCTAACCGGTTCGGTTTCCCTCCCTCCCTCCCATTCCAAGTGCGCCTCCTCATTGTCCGCCATAGATCTGTCGCAAAACGCACTCTCCGGTTCCCTCTCCGACATGTCATTTTTCTCCTCATGCTCAAACCTCCAATCGCTCAACCTCTCCAACAACCTCCTCCAGTTCGACTCAGCGCGCTGGAAGCTCAACCTCCGCGTGGCGGATTTCTCCTACAACAAGATTTCAGGGCCGGCACTCATCCCGTGGCTCCTCAACCCCGACCTCAACCACCTGGCGCTGAAAGGAAACAAAATCTCCGGCGAAAGCGACTTCTCCGCTGCCGCTTCTCTTCAGTACTTGGACCTCTCCTCCAACAACTTCTCCGTGCCGATTCCTTCCTTCGGTGACTGTTCCTCCCTCCAGTATCTAGACCTTTCCGCCAACAAATACTTCGGCGACATTGCTCACACTCTCTCCGCTTGTAACCGCCTCCTCTACCTCAACGTCTCCAGCAACCAGTTctccggtccgcttccctccctcccctccggttccctccAGTTCGTGTACCTCGCCGCCAACCACTTCCACGGCCAGATTCCCTCCGCGCTCGCCGACCTCTGCTCCACTCTAGTTCAGCTGGATCTCTCCTCCAACAACCTCACCGGCTTAGTCCCCGGCGCGTTCGGCGCGTGTGCTTCTCTCGAATCCTTCGACATCTCCAGCAACCTCTTCGGCGGCGCCTTGCCCATGGAGGTGTTGATGAAAATGAGCAGCCTGAAGGAGCTGGCGGTGGCGTTCAACACCTTCACCGGTCCTCTCCCGGAGACTCTCTCGAAGCTGGCGTCTCTGGAGTCCCTGGATCTGAGCTCCAACAACTTCACTGGGCCTATAACGGCAACTCTCTGCGGAGACGGTGAGAGTAATCTGAAGGAGCTTTTCCTGCAGAATAACCGTTTCACGGGTTTTATTCCGCCCTCCCTCAGCAACTGCTCCAACCTCGTTGCCTTGGACTTGAGCTTCAACTTCCTCAGTGGGACTATCCCTGCGAGCCTGGGCTCGCTCTCCAAGCTTCGAGACCTAATCATCTGGCTGAACCAGCTCCACGGCGAGAttcctcgggagcttatgtatttgaacaacctcgagaacctgattctggatttcaacgagttgacAGGGAACATTCCCTCTGGACTAGTTAACTGCACCAAGCTCAATTGGATCTCCCTCTCCAACAACAGGCTCACCGGCCAGATTCCTCCCTGGATTGGGAAGCTTTCCAATCTCGCCATACTCAAGCTCAGCAATAACTCTTTATCCGGCCGGATTCCGCCGGAGCTTGGTGACTGCACTAGCTTGATATGGCTGGATCTGAACACCAATTCCCTCACCGGCTCGATTCCGCCGGAGCTCTTCAAGCAGTCCGGGAAGATCGCGGTGAATTTCATCAGCGGGAAGACGTATGTTTACATAAAGAATGATGGGAGTAAGGAGTGTCACGGAGCGGGGAACTTGCTGGAGTTTGCGGGGATCAGTCAGCAGCAGCTGAACAGGATTTCGACTAGGAACCCTTGCAATTTCACTAGGGTTTATGGAGGTAAGGTGCAGCCAACGTTTAACCATAATGGTTCTATGATATTTTTGGATATCTCGCACAACATGTTGTCAGGGAGTATTCCTAAGGAAATCGGGGCCATGTACTATTTGTACGTTCTCAATTTGGGCCACAACAATGTGTCCGGGAGCATTCCTCAGGAGCTTGGCAAGATGAAGAATCTCAACATACTTGATCTCTCTAATAATAGACTCGCGGGGCAGATTCCCGAGAGCCTCACGGGGCTTTCTTTGCTCACTGAGATTAATTTGTCAAACAACTTACTTTCGGGCCAGATTCCTGAATCGGGTCAATTGGATACTTTACCTGTGGCTGGGTTTCAGAACAACTCTGGTCTCTGTGGAGTTCCTCTGAGCCTGTGTGGATCGGATTCGGTAAACAGTGGAAGTGGCCAACATTTGAAGTCTCATAGGAGGCAGGCTTCTCTGGCGGGGAGTGTGGCCATGGGGTTGCTCTTTTCCCTATTCTGTATCTTTGGTTTGATCATAATTGCCATTGAGACCAGAAAGAGGAGGAAGAAGAAGGAGGCTGCTCTTGAGGCTTATGTTGATGGTAATTCGCATTCGGGTCCTGCCAATGTGAGCTGGAAGCACACCAGTAACCGGGAAGCGCTTAGCATAAACCTTGCAACGTTTGAGAAGCCCCTTCGGAAACTCACGTTCGCGGACCTTCTGGACGCTACCAATGGCTTTCACAACGACAGTCTCATTGGCTCTGGCGGGTTCGGGGACGTGTACAAGGCTCAGTTGAAGGACGGAAGTGTTGTGGCCATCAAGAAGCTGATCCATGTCAGCGGACAAGGGGACAGGGAATTCACCGCTGAAATGGAAACTATTGGGAAAATCAAGCACAGGAACCTTGTTCCCCTGCTGGGATACTGTAAGGTTGGGGAAGAGAGGCTCCTGGTTTATGAGTACATGAAGTATGGAAGCTTGGAGGATGTTCTGCATGACCAGAAGAAAGCTGGGATCAGGTTGAACTGGGCTGTGAGGAGGAAAATTGCGATTGGGGCTGCGAGGGGTTTGTCTTTTCTTCACCACAACTGTAACCCGCACATCATTCACAGAGATATGAAGTCGAGCAATGTGTTGCTTGATGAAAACCTGGAGGCCAGGGTGTCTGATTTTGGAATGGCTAGGCACATGAGTGCTATGGATACACATTTGAGTGTGAGCACACTTGCGGGCACCCCCGGGTACGTTCCTCCGGAGTATTATCAGAGTTTCAGATGCTCCACCAAAGGTGATGTCTACAGTTACGGTGTGGTTTTGTTGGAGCTTCTAACTGGGAAGAGGCCAACGGACTCGTCTGATTTTGGAGACAATAATCTTGTAGGATGGGTTAAACAACATGCTAAGATGAAAATAAGTGATATTTTTGACCCGGAGCTCATGAAGGAAGACCCCAATCTGGAGGTTGAGCTTTTGCAGCACCTCAAGGTTGCTTGTTCTTGTTTGGATGATAGGCCATGGCGGCGTCCAACCATGATTCAAGTGATGGCAATGTTCAAGGAGATTCAGGCGGGATCCGGGATTGATTCTCAGTCAACCATAACCAACGAAGAGGATAGTTTCAATGCGGTTGAGATGGTGGAGATGAGCATTAAAGAAGTCCCAGAATTGAGCAAGCATTAG 3546 0.5028 MKALYRSSLLVLLSLAIFFTLIGAASRDPTPQLISFKNSLPNPTLLPNWLPNQNPCTFTRITCNQTHLTSIDLTSIPLSTDLTVVATYLLTLDHLQFISLKSTNLTGSVSLPPSHSKCASSLSAIDLSQNALSGSLSDMSFFSSCSNLQSLNLSNNLLQFDSARWKLNLRVADFSYNKISGPALIPWLLNPDLNHLALKGNKISGESDFSAAASLQYLDLSSNNFSVPIPSFGDCSSLQYLDLSANKYFGDIAHTLSACNRLLYLNVSSNQFSGPLPSLPSGSLQFVYLAANHFHGQIPSALADLCSTLVQLDLSSNNLTGLVPGAFGACASLESFDISSNLFGGALPMEVLMKMSSLKELAVAFNTFTGPLPETLSKLASLESLDLSSNNFTGPITATLCGDGESNLKELFLQNNRFTGFIPPSLSNCSNLVALDLSFNFLSGTIPASLGSLSKLRDLIIWLNQLHGEIPRELMYLNNLENLILDFNELTGNIPSGLVNCTKLNWISLSNNRLTGQIPPWIGKLSNLAILKLSNNSLSGRIPPELGDCTSLIWLDLNTNSLTGSIPPELFKQSGKIAVNFISGKTYVYIKNDGSKECHGAGNLLEFAGISQQQLNRISTRNPCNFTRVYGGKVQPTFNHNGSMIFLDISHNMLSGSIPKEIGAMYYLYVLNLGHNNVSGSIPQELGKMKNLNILDLSNNRLAGQIPESLTGLSLLTEINLSNNLLSGQIPESGQLDTLPVAGFQNNSGLCGVPLSLCGSDSVNSGSGQHLKSHRRQASLAGSVAMGLLFSLFCIFGLIIIAIETRKRRKKKEAALEAYVDGNSHSGPANVSWKHTSNREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGSGGFGDVYKAQLKDGSVVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKAGIRLNWAVRRKIAIGAARGLSFLHHNCNPHIIHRDMKSSNVLLDENLEARVSDFGMARHMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVLLELLTGKRPTDSSDFGDNNLVGWVKQHAKMKISDIFDPELMKEDPNLEVELLQHLKVACSCLDDRPWRRPTMIQVMAMFKEIQAGSGIDSQSTITNEEDSFNAVEMVEMSIKEVPELSKH 1181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00117 1181 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 1155 - -
Cca03g00117 1181 Gene3D Phosphorylase Kinase; domain 1 829 943 - -
Cca03g00117 1181 ProSiteProfiles Protein kinase domain profile. 868 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00117 1181 CDD STKc_IRAK 874 1143 - -
Cca03g00117 1181 Pfam Leucine rich repeat N-terminal domain 33 64 IPR013210 -
Cca03g00117 1181 SMART LRR_typ_2 379 403 IPR003591 -
Cca03g00117 1181 SMART LRR_typ_2 689 712 IPR003591 -
Cca03g00117 1181 SMART LRR_typ_2 406 429 IPR003591 -
Cca03g00117 1181 SMART LRR_typ_2 477 501 IPR003591 -
Cca03g00117 1181 SMART LRR_typ_2 525 549 IPR003591 -
Cca03g00117 1181 SMART LRR_typ_2 550 573 IPR003591 -
Cca03g00117 1181 SMART LRR_typ_2 713 746 IPR003591 -
Cca03g00117 1181 SMART LRR_typ_2 305 329 IPR003591 -
Cca03g00117 1181 Pfam Leucine Rich Repeat 214 233 IPR001611 GO:0005515
Cca03g00117 1181 Pfam Leucine rich repeat 284 342 IPR001611 GO:0005515
Cca03g00117 1181 Pfam Leucine rich repeat 668 726 IPR001611 GO:0005515
Cca03g00117 1181 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Cca03g00117 1181 Pfam Leucine rich repeat 406 464 IPR001611 GO:0005515
Cca03g00117 1181 SUPERFAMILY L domain-like 240 745 - -
Cca03g00117 1181 Pfam Brassinosteroid receptor island domain 575 639 IPR045381 -
Cca03g00117 1181 SMART serkin_6 868 1140 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00117 1181 PRINTS Leucine-rich repeat signature 309 322 - -
Cca03g00117 1181 PRINTS Leucine-rich repeat signature 689 702 - -
Cca03g00117 1181 Gene3D Transferase(Phosphotransferase) domain 1 944 1145 - -
Cca03g00117 1181 Pfam Protein kinase domain 868 1138 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00117 1181 PANTHER SYSTEMIN RECEPTOR SR160 8 1155 - -
Cca03g00117 1181 ProSitePatterns Protein kinases ATP-binding region signature. 874 897 IPR017441 GO:0005524
Cca03g00117 1181 SUPERFAMILY Protein kinase-like (PK-like) 854 1146 IPR011009 -
Cca03g00117 1181 ProSitePatterns Serine/Threonine protein kinases active-site signature. 990 1002 IPR008271 GO:0004672|GO:0006468
Cca03g00117 1181 Gene3D - 580 640 - -
Cca03g00117 1181 Gene3D Ribonuclease Inhibitor 33 758 IPR032675 -
Cca03g00117 1181 SUPERFAMILY L domain-like 53 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00117 Cca-Chr3 1634697 1638846 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00117 32 1177 Receptor kinase-like Gene Family AT4G39400 68.648 0.0 1539
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Cca03g00117 Pkinase 4.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00117 K13415 - gmx:100799772 1971.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00117 03 1634697 1638846 Cca03g00117 03 1634697 1638846 ECH