Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00116 ATGATGTCAACAACGTCTCAAACTAATGTTAACCAAAGCTTGTTTGAAGAGCAGGATCAGATCTCTACGCAGATGGGGTTCATTCCTTTCCCACCTAACCAAACCTTCCCTCCTTTGGGTTGTCATCAATCTTTGAAACCCATCGGTGCAATAGTTCCTTCACTTTCATCTGAAACTGCTTCTTCTGCTGCAAATTTTGCTGAAACCCTACTCTCAACTGCTATTCAAAGACCACGAGAAGATCTCACTTCAAGTTTTGGTGGAGGAGAAGGCCAACTCCTTTCCTTGAACAGATCGAGGGTGAATTCATGGGCATGGGAAGAAGTAACCGATTGCTTGATGGGTAAAAGAATTGGAGGAGATGATAATCATCATCATCTAGGGGTTTCTTCCATGAAGATGAAGAAAGTCAAGGCAAGGAGAAAGGTGAGGGAGCCAAGGTTTTGCTTCAAGACTATGAGCGATGTGGATGTGTTGGATGATGGCTACAAGTGGAGGAAGTACGGACAGAAAGTGGTAAAGAACACACAGCACCCAAGAAGCTACTATCGTTGCACCCAAGATAACTGTCGAGTAAAGAAACGCGTGGAGCGGTTGGCAGAGGATCCAAGGATGGTGATAACCACATATGAAGGGAGACATGCGCACTCACCATCAAATGAACTTGAAGACTCGCAATCTCCTTCTGAACTTAGTAACTTCTTCTGGTCCTTCAGCTTAGGGTTATGGGCTGATGAGAGTTCTAATCACTTGAATACTAAACTCGCCGACAACGACCCCAACCGCTATGGCACGCCGCCTGCCGCCAAGGACGTCGTCAAGAACCTCCCCACCGTCACCGTCGACGAAGACACTGAACTCGGAGTTGAACCAGTGTGCGGTTTGCCAGGAGAGTTTGAGAAGGGGTTGCATGTGACGCAAATGCCCTGCAAGCACGTGTACCACGGTGACTGCTTGATTCCCTGGCTTCGCCTGCACAACTCTTGCCCCGTGTGCCGGTACGAATTGCCCACAAACGACGCCGATTACGAGAATCGGACGCAGGGGAACGCCGGTGATGGGTCGAGGTCCAGTGGGAGAGATAGTGGTGGCAGCGACAATGGCGGTGCAAGTGCAAGGGGGAGTAACAGGCCTGTTCACAGGACTTTTAGAATATATCTGGGGAATCCTTTTGATGCAGGTGGGTCTGCGCACGACAGCGGGGAAAGGAGATGGAGGAATTTTCCAGAAGATATGGATTGA 1242 0.4919 MMSTTSQTNVNQSLFEEQDQISTQMGFIPFPPNQTFPPLGCHQSLKPIGAIVPSLSSETASSAANFAETLLSTAIQRPREDLTSSFGGGEGQLLSLNRSRVNSWAWEEVTDCLMGKRIGGDDNHHHLGVSSMKMKKVKARRKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTQHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSNELEDSQSPSELSNFFWSFSLGLWADESSNHLNTKLADNDPNRYGTPPAAKDVVKNLPTVTVDEDTELGVEPVCGLPGEFEKGLHVTQMPCKHVYHGDCLIPWLRLHNSCPVCRYELPTNDADYENRTQGNAGDGSRSSGRDSGGSDNGGASARGSNRPVHRTFRIYLGNPFDAGGSAHDSGERRWRNFPEDMD 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00116 413 SUPERFAMILY RING/U-box 298 339 - -
Cca03g00116 413 Gene3D WRKY domain 146 212 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00116 413 PANTHER WRKY TRANSCRIPTION FACTOR 13-RELATED 65 227 - -
Cca03g00116 413 MobiDBLite consensus disorder prediction 397 413 - -
Cca03g00116 413 MobiDBLite consensus disorder prediction 343 372 - -
Cca03g00116 413 SMART WRKY_cls 159 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00116 413 MobiDBLite consensus disorder prediction 343 413 - -
Cca03g00116 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 339 IPR013083 -
Cca03g00116 413 Pfam WRKY DNA -binding domain 160 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00116 413 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 65 227 IPR044810 GO:0003700
Cca03g00116 413 Pfam Ring finger domain 292 333 IPR001841 -
Cca03g00116 413 SUPERFAMILY WRKY DNA-binding domain 151 218 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00116 413 ProSiteProfiles Zinc finger RING-type profile. 291 333 IPR001841 -
Cca03g00116 413 ProSiteProfiles WRKY domain profile. 154 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00116 Cca-Chr3 1616394 1625497 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00116 58 236 WRKY Transcription Factor Family AT4G39410 52.212 1.26e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g00116 WRKY 1.6e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00116 - - gmx:100127389 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00116 03 1616394 1625497 Cca03g00116 03 1616394 1625497 ECH