Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00113 ATGGAGTACTATTTTGGAAACCCTAATCCTAATCCTAACCCTTATTTCCATCACTCTACCGTAACAAACGTGGCATCTCCCTCCTCCGAGCTTATGCTATCTGATTATCTCGTGTTGGAAGATGGTACTGTTGATCATCATCAAGAGTCTTGGTCACAGAGCACAGAAACTGAATCATCGGAGAAAGCAACCTCCAGCGATGCCACTCATGGATTTGCTGATGCAACCTCCACCATCAATAACATAAAGTGCAAAAGTGATGGAAATAAGCGAAAGAAGGAAGAAGTGAGTCAAAGCGTGACATTTAGAACCAGATCGCAGCTTGAGATTATGGATGATGGATATAAATGGAGGAAATACGGAAAGAAGACAGTGAAGAACAGCCCCAACCCAAGGAACTACTACAAGTGTTCAGGTGAAGGATGCTGTGTGAAGAAAAGGGTGGAAAGGGATAGGGATGACTCGAGCTATGTGTTAACAACTTATGAAGGTGTCCACAATCATGAGAGCCCCTCTATCAACTACTACAGCCAAATGTCCTTAGTGCATCCTAATGATTGGGCGCTGCAATCTTCAGCAAACTCATCATCTATGCATTGA 600 0.4333 MEYYFGNPNPNPNPYFHHSTVTNVASPSSELMLSDYLVLEDGTVDHHQESWSQSTETESSEKATSSDATHGFADATSTINNIKCKSDGNKRKKEEVSQSVTFRTRSQLEIMDDGYKWRKYGKKTVKNSPNPRNYYKCSGEGCCVKKRVERDRDDSSYVLTTYEGVHNHESPSINYYSQMSLVHPNDWALQSSANSSSMH 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00113 199 SUPERFAMILY WRKY DNA-binding domain 103 171 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00113 199 MobiDBLite consensus disorder prediction 46 72 - -
Cca03g00113 199 Gene3D WRKY domain 95 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00113 199 ProSiteProfiles WRKY domain profile. 106 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00113 199 MobiDBLite consensus disorder prediction 48 72 - -
Cca03g00113 199 Pfam WRKY DNA -binding domain 112 169 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00113 199 PANTHER WRKY TRANSCRIPTION FACTOR 50-RELATED 10 176 - -
Cca03g00113 199 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 10 176 IPR044810 GO:0003700
Cca03g00113 199 SMART WRKY_cls 111 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00113 Cca-Chr3 1540837 1543180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00113 7 186 WRKY Transcription Factor Family AT5G64810 46.277 5.73e-46 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g00113 WRKY 8.1e-23 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00113 03 1540837 1543180 Cca03g00113 03 1540837 1543180 ECH
Cca05g00539 05 12158684 12165006 Cca03g00113 03 1540837 1543180 PCT