Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00111 ATGGACTTGGCGGCGAAGCTTCATCACTTAGACCTCACCGGCGCGGTCATTTTGGATGCACGAAAGCCCTCCGTGCTACGCCACTTTCCGCCACGTGTACACACCAGAGGTAACACCAACACCAACGGTAACGCCAATTTAACTTACACCAATCGGTTCCCGGGCCCACTCAGGCCCAATTCCACTTCACCGTCGGGCCTGTCCACGGTAACcgtcgacgacaacgacaacgacgacATCGAGTCTCTCTTCTCCGAATCCAATTCGGTGGAGGAGCGGCGCGTGAGGAAGCAACCGAGCACCGGCGCGTCCGGCGTTTCGTCCGGCGTGAAGCTGGAAAACGTGGGGAAAAGCTACAAGGGCGTGACGGTGCTCAAGGACGTGAGCTGGGAGGTGAAGAAGGGGGAGAAGGTGGGTTTGGTCGGCGTGAACGGCGCGGGGAAGACCACGCAGATGAGGATTATCGCGGGTTTGGAGGAGCCGGATTCGGGGAACGTGATTAAGGCCAAGCCGAACATGAGAATCGCGTTTCTGAACCAGGAGTTCGAGGTGTCGCCGAGTAGGACGGTGAGGGAGGAGTTTATGAGCGCCTTCAaggaggagatggaggtggcggggaagttggagAAGGTGCAGAAGGCGCTTGAAGGTGCCGTCGACGATTTGGAGCTGATGGGGAGGCTTTTGGATGAGTTTGATTTGCTTCAGCGGAGGGCGCAGTCTGTGGACTTGGATGAGGTTGATGCCAAGATAAATAAGTTGGTGCCCGAACTTGGTTTTGCTCCTGAGGATTCTGATAGGTTGGTTGCGTCTTTCAGTGGAGGCTGGCAGATGAGGATGTGTCTCGGCAAGATTCTTCTTCAGGAGCCTGATTTGTTGTTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACCATTGAGTGGCTTGAAGACTATCTTAACCAGCAGGATGTGCCAATGGTTGTCATTTCTCATGACCGAGCTTTTCTTGATCAGCTGTGTACAAAAATTGTGGAAACTGACATGGGTGTATCCAGGACATTTGAGGGAAACTATTCTCAGTATGTAGTTTCAAAAGCAGCATGGATTGAAGCACAGTTTGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAGCAGACAAGAGACTTGATAAATAGGTTAGGTGCTGGAGCAAATTCTGGCCGTGCTTCATCTGCTGAGAAGAAGCTGGAGAGACTTCAGGATGAGGAACTAGTGGAGAAGCCATTTGAACGGAAACAAATGAAGATCAGGTTCCCTGAACGTGGAAGGAGTGGAAGATCTGTTGTAACAATTAAGAACTTGGAATTTGGCTTTGAGGATAAGACACTTTTCAAAAAGGCAAATCTTACAATTGAAAGGGGAGAAAAAATTGCAATTATTGGTCCAAATGGATGTGGCAAGAGCACTTTACTGAAATTGATTATGGGTTTGGAAAAGCCAACTGGGGGTGAACTTTTGCTTGGGGAGCATAATGTATTGCCTAACTATTTTGAGCAGAATCAGGCTGAGGCACTTGATCTGGAGAAGACAGTGCTTGAGACTGTAGAGGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGGCTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGATCGAAAAGTTTCACTATTGAGTGGTGGTGAGAAGGCGCGACTGGCATTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAATGAATACGAGGGCACTGTTATCACAGTATCTCATGACCGATACTTCATAAAGCAAATAGTTAATAGAGTGATAGAAATTAAAGATGGCACTATACAAGATTATGCTGGTGATTACAATTATTATTTAGAGAAGAATCTTGATGCTAGGGAAAGCGCACTTGATCGCGAGGCAGAGCTTGATAGCAAAGCTCCTAAAGTGAAAGCCAAATCCAAGATGTCCAAGGCTGAGAAAGAAGCACGGAAGAAACAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCTAAGGGTGTGAAAAATGCGAAGAGATGGAATTGA 2115 0.4586 MDLAAKLHHLDLTGAVILDARKPSVLRHFPPRVHTRGNTNTNGNANLTYTNRFPGPLRPNSTSPSGLSTVTVDDNDNDDIESLFSESNSVEERRVRKQPSTGASGVSSGVKLENVGKSYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVIKAKPNMRIAFLNQEFEVSPSRTVREEFMSAFKEEMEVAGKLEKVQKALEGAVDDLELMGRLLDEFDLLQRRAQSVDLDEVDAKINKLVPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDVPMVVISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVVSKAAWIEAQFAAWEKQQKEIEQTRDLINRLGAGANSGRASSAEKKLERLQDEELVEKPFERKQMKIRFPERGRSGRSVVTIKNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGELLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYEGTVITVSHDRYFIKQIVNRVIEIKDGTIQDYAGDYNYYLEKNLDARESALDREAELDSKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKGVKNAKRWN 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00111 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 416 643 IPR027417 -
Cca03g00111 704 ProSitePatterns ABC transporters family signature. 556 570 IPR017871 GO:0005524
Cca03g00111 704 Gene3D - 399 666 IPR027417 -
Cca03g00111 704 PANTHER ABC TRANSPORTER F FAMILY MEMBER 5 48 694 - -
Cca03g00111 704 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 110 368 IPR003439 GO:0005524
Cca03g00111 704 MobiDBLite consensus disorder prediction 656 684 - -
Cca03g00111 704 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 48 694 - -
Cca03g00111 704 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 437 652 IPR003439 GO:0005524
Cca03g00111 704 MobiDBLite consensus disorder prediction 656 704 - -
Cca03g00111 704 CDD ABCF_EF-3 437 629 - -
Cca03g00111 704 ProSitePatterns ABC transporters family signature. 272 286 IPR017871 GO:0005524
Cca03g00111 704 Pfam ABC transporter 453 584 IPR003439 GO:0005524
Cca03g00111 704 Pfam ABC transporter 125 300 IPR003439 GO:0005524
Cca03g00111 704 Pfam ABC transporter 339 426 IPR032781 -
Cca03g00111 704 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 345 IPR027417 -
Cca03g00111 704 Coils Coil 664 693 - -
Cca03g00111 704 MobiDBLite consensus disorder prediction 34 73 - -
Cca03g00111 704 MobiDBLite consensus disorder prediction 29 109 - -
Cca03g00111 704 CDD ABCF_EF-3 110 340 - -
Cca03g00111 704 Gene3D - 107 391 IPR027417 -
Cca03g00111 704 SMART AAA_5 461 629 IPR003593 -
Cca03g00111 704 SMART AAA_5 134 349 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00111 Cca-Chr3 1525961 1531851 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00111 434 646 Calmodulin-binding Proteins AT2G36910 25.000 2.73e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00111 - - gmx:100796907 1210.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g00111 03 1525961 1531851 Cca03g00111 03 1525961 1531851 ECH