Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00093 ATGTCCAGAGAAAGGGAGAGATTTGATGAGATAGGGAAAAAGATCAAGAGGGAAGGAGATGTTTCTTCTCAAATGGGAAGAAGACATATGTTAGGCCCTCCTGGAACCCTAAATACTATCACCCCTTGTGCAGCATGCAAGCTGTTGAGAAGAAGATGTGCTCAAGAATGTCCCTTTTCTCCATATTTCTCTCCCCATGAGCCCCAAAAGTTTGCTTCTGTCCACAAAGTTTTTGGTGCCAGCAACGTCTCAAAGATGCTCATGGAAGTACCAGAGTGTCAGAGAGCTGATGCTGCAAATAGTCTAGTGTATGAGGCTAATGTGAGGCTAAGAGACCCTGTGTATGGATGCATGGGTGCAATTTCTGCTTTGCAACAACAAGTTCAATCTTTACAAGCTGAGCTTAATGCAGTAAGGGCTGAGATACTCAAATACAAGCTCAGGGAAGCTAACATGATACCCTCCTCTCATGTTGCAATGCTCCCTTCATCTGGGGTTGTTTCAATTGCCGctccaccgccaccaccgccgccgccacctcctcctccttctcttcctccAAATTCTTCATCTTCTTCCATGTACATCCAACAGAGGGATCCCACCAGTTATACCACACTTTCAAGTGATAATATTTCCTATTTTGGTTAA 651 0.3994 MSRERERFDEIGKKIKREGDVSSQMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPECQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAEILKYKLREANMIPSSHVAMLPSSGVVSIAAPPPPPPPPPPPPSLPPNSSSSSMYIQQRDPTSYTTLSSDNISYFG 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00093 216 Coils Coil 121 148 - -
Cca03g00093 216 MobiDBLite consensus disorder prediction 169 188 - -
Cca03g00093 216 MobiDBLite consensus disorder prediction 189 216 - -
Cca03g00093 216 Pfam Lateral organ boundaries (LOB) domain 42 139 IPR004883 -
Cca03g00093 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 15 26 216 - -
Cca03g00093 216 ProSiteProfiles LOB domain profile. 41 142 IPR004883 -
Cca03g00093 216 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 26 216 - -
Cca03g00093 216 MobiDBLite consensus disorder prediction 169 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00093 Cca-Chr3 1325817 1328538 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00093 27 216 AS2 family AT2G40470 73.604 4.30e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g00093 LOB 2.4e-40 No_clan