Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00092 ATGCAGGGATGTGATGGTTCAATTCTATTGGATGACACATCAAGCTTCACCGGTGAGAAGAACGCAAACCCCAACAGAAACTCTGCTCGTGGATTCGATGTCATCGACAACATCAAATCTGCCGTGGAGAAAGTGTGCCCTGGAGTTGTCTCCTGCGCAGATATCCTTGCCATCACTGCTAGAGACTCCGTTGAGATCCTTGGAGGCCCTACTTGGAATGTTAAACTTGGAAGAAGAGACGCGAAGACAGCTAGCCAATCTGCTGCTAACAATGGCATCCCTGCACCCACTTCAAACCTTAACCAACTCATCTCCAGATTCAGTGCTCTCGGACTTTCCACCAAGGACTTGGTCGCCTTGTCTGGTGGTCACACAATTGGGCAAGCAAGATGCACAAACTTCAGAGCACGTATCTACAACGAGAGCAACATAGATAGCTCATTTGCAAGCACTAGGAAATCAAGCTGCCCCCAGTCATCAGGGTCAGGGGACAACAATCTGGCACCACTTGATCTTCAGACTCCGACCACATTTGACAACTACTACTTCAGGAACCTGGTTCAGAAGAAGGGTCTCCTTCACTCTGATCAACAACTATACAATGGTGGGTCCACCGACTCCATAGTGCGTGGCTACAGCACTGACCAGAGCTCCTTTTCTTCTGATTTTGCATCCGCCATGATCAAGATGGGAGACATTAGTCCTCTCACCGGCTCAAACGGAGAAGTCAGGAAGAATTGTAGAAGGGTTAACTGA 756 0.4868 MQGCDGSILLDDTSSFTGEKNANPNRNSARGFDVIDNIKSAVEKVCPGVVSCADILAITARDSVEILGGPTWNVKLGRRDAKTASQSAANNGIPAPTSNLNQLISRFSALGLSTKDLVALSGGHTIGQARCTNFRARIYNESNIDSSFASTRKSSCPQSSGSGDNNLAPLDLQTPTTFDNYYFRNLVQKKGLLHSDQQLYNGGSTDSIVRGYSTDQSSFSSDFASAMIKMGDISPLTGSNGEVRKNCRRVN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00092 251 PRINTS Plant peroxidase signature 185 202 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Plant peroxidase signature 30 43 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Plant peroxidase signature 169 184 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Plant peroxidase signature 49 59 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Plant peroxidase signature 68 83 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Plant peroxidase signature 115 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Plant peroxidase signature 225 238 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 ProSiteProfiles Plant heme peroxidase family profile. 1 251 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PANTHER PEROXIDASE 72-RELATED 2 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 SUPERFAMILY Heme-dependent peroxidases 2 251 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Haem peroxidase superfamily signature 50 67 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Haem peroxidase superfamily signature 68 80 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Haem peroxidase superfamily signature 116 131 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PRINTS Haem peroxidase superfamily signature 171 186 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 PANTHER PEROXIDASE 2 251 - -
Cca03g00092 251 ProSitePatterns Peroxidases proximal heme-ligand signature. 116 126 IPR019793 -
Cca03g00092 251 Pfam Peroxidase 2 214 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cca03g00092 251 MobiDBLite consensus disorder prediction 148 168 - -
Cca03g00092 251 Gene3D - 2 248 - -
Cca03g00092 251 Gene3D Peroxidase, domain 2 94 230 - -
Cca03g00092 251 CDD secretory_peroxidase 2 250 IPR033905 GO:0004601|GO:0042744
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00092 Cca-Chr3 1316659 1318644 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00092 1 251 Peroxidase AT5G05340 76.892 6.21e-146 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00092 K00430 - gmx:100803637 461.84