Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00089 ATGGCAAGTGTCAGCAACATTGCTTTCCCTTCGCTAGTTGGAGTTCCTTTAGATACGCATGCACTTTCAAAGCAGATAAAGAATAAAGCTTCTTGCGGTTTTAGGCTTCATCGTAATCCTAACTACTCTGTCAGGTTGAGTCCAATCTGTTGTAAACTACCAGAAAGTGGGATTGAGGAGAACCCCACCACCACTAGCAAGAGACCCCCTAAGAGTAAGGACAGGATGGAGGAGTACAATATTGCTATGAAGAGAATGATGAGGAACCCTTATGAGTACCACCATGATCTGGGTATGAATTACACTCTTGTAACGGACAACTTGATTGTGGGCTCCCAACCGCAGAAACCCAAAGACATAGATCACCTAAAAAAGGAAGAGGGTGTGGCATACATTCTAAACTTGCAACAGGATAAGGATGTTGAGTATTGGGGAATAGACTTGCAGTCTATAATAAGAAGGTGTCATGAACTTGAAATTAGCCACATGAGGAGACCGGCAAAAGACTTTGATCCAGACTCCTTGCGAAGTGAACTACCTAAAGCAGTCTCATCCTTAGAATGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTACATTGTCAATCTACAGCTGGACTCGGAAGAGCACCAGCGGTGACAATTGCTTATTTGTTCTGGTTTTGTGTCATGAATCTAAACACAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCGAATAAAAGAGCAATACGTGGAGCTACTTATGATTTGGCTAAGAATGATCCATGGAAGGAGCCATTTGAGAATCTTCCAGAATATGCATTTGAGGATATAGCTGACTGGGAAAGAAACTTGATTCAAAATCGTGTCCGTTCCCTTCGTGGAACTTGA 879 0.4232 MASVSNIAFPSLVGVPLDTHALSKQIKNKASCGFRLHRNPNYSVRLSPICCKLPESGIEENPTTTSKRPPKSKDRMEEYNIAMKRMMRNPYEYHHDLGMNYTLVTDNLIVGSQPQKPKDIDHLKKEEGVAYILNLQQDKDVEYWGIDLQSIIRRCHELEISHMRRPAKDFDPDSLRSELPKAVSSLEWAISEGKGRVYVHCQSTAGLGRAPAVTIAYLFWFCVMNLNTAYDMLTSKRPCGPNKRAIRGATYDLAKNDPWKEPFENLPEYAFEDIADWERNLIQNRVRSLRGT 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00089 292 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF2, CHLOROPLASTIC 2 292 - -
Cca03g00089 292 SMART dsp_5 100 252 IPR020422 GO:0006470|GO:0008138
Cca03g00089 292 Gene3D Protein tyrosine phosphatase superfamily 83 292 IPR029021 -
Cca03g00089 292 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 97 244 IPR029021 -
Cca03g00089 292 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 2 292 - -
Cca03g00089 292 ProSiteProfiles Dual specificity protein phosphatase domain profile. 100 259 IPR020422 GO:0006470|GO:0008138
Cca03g00089 292 CDD DSP_laforin-like 99 248 IPR045204 GO:0019203|GO:0046838
Cca03g00089 292 Pfam Dual specificity phosphatase, catalytic domain 121 242 IPR000340 GO:0008138|GO:0016311
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00089 Cca-Chr3 1232294 1235008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00089 26 292 Protein tyrosine phosphatase (PTP) family AT3G10940 74.157 1.30e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00089 - - gmx:100787079 510.76