Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00084 ATGGCCGCACGAGCCCTATTCAGCAGCAAAACCCTAGCCCGGGTGGTCCGCAACGACGCGGCCAAGCCTCTcggagtcggcgtggcggcggcggcggcTATGCATTCCCGCGGCTTGCACGTCTACACGCTTCCCGATCTGGATTACGACTATGGCGCGCTGGAACCAGCCATCAGCGGCGAAATCATGCAGCTCCACCACCAGAAGCACCACCAGACCTACATCACCAACTACAACAAGGCTCTCGAACAGCTTGATGCTGCGGTCGCCAAGGCCGATTCCTCTACCGTCGTTAAGCTCCAGAACGCCATCAAGTTCAACGGCGGAGGTCATATCAACCATTCTATTTTCTGGAAAAATCTAGCTCCTGTTCGTGAAGGAGGTGGTGAACCACCCAAGGGATCATTGGGATGGGCTATTGACACACATTTTGGCTCCTTTGATGCATTGATACAAAAAGTTAATGCAGAAGGTGCAGCGCTACAGGGGTCTGGATGGGTGTGGCTTGGTCTAGACAAAGAGTTGAAGAGGCTTGTGGTTGAAACTACTGCCAACCAGGACCCACTGGTTACTAAGGGACCAAATTTGGTCCCATTGCTTGGTGTTGATGTATGGGAGCATGCATATTACTTGCAGTACAAGAATGTTAGACCAGACTATCTGAAGAACATTTGGAAAGTTATTAATTGGAAATATGCCAGTGAAGTCCGCAGCACTGAAAACCCTAGAGAAGAGCGTGCAAGTCCCGGCTACCCACCCACCATGACATTCAAGCGCAGGAATGGCGGTCGCAACAAACACGGCCGCGGCCACGTCAAATTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCTATCAAGAGGTTTTTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACAATACACTCTTCCCAAACTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCTATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGATTCATCAGGCGCAGGGATGATGCACCAAGGCCTGGTCAGCCTGGTCAAGCACCTCGTCCTGCTGGGGTAGGAGCTCCTGCTCGAACCTAA 1152 0.5043 MAARALFSSKTLARVVRNDAAKPLGVGVAAAAAMHSRGLHVYTLPDLDYDYGALEPAISGEIMQLHHQKHHQTYITNYNKALEQLDAAVAKADSSTVVKLQNAIKFNGGGHINHSIFWKNLAPVREGGGEPPKGSLGWAIDTHFGSFDALIQKVNAEGAALQGSGWVWLGLDKELKRLVVETTANQDPLVTKGPNLVPLLGVDVWEHAYYLQYKNVRPDYLKNIWKVINWKYASEVRSTENPREERASPGYPPTMTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRPAGVGAPART 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00084 383 MobiDBLite consensus disorder prediction 344 364 - -
Cca03g00084 383 Pfam Iron/manganese superoxide dismutases, alpha-hairpin domain 42 122 IPR019831 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 Pfam Ribosomal protein S26e 255 359 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca03g00084 383 PANTHER SUPEROXIDE DISMUTASE 2 27 240 - -
Cca03g00084 383 Pfam Iron/manganese superoxide dismutases, C-terminal domain 132 234 IPR019832 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 MobiDBLite consensus disorder prediction 239 266 - -
Cca03g00084 383 PANTHER SUPEROXIDE DISMUTASE 27 240 - -
Cca03g00084 383 PRINTS Manganese superoxide dismutase signature 45 56 IPR001189 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 PRINTS Manganese superoxide dismutase signature 161 169 IPR001189 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 PRINTS Manganese superoxide dismutase signature 66 79 IPR001189 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 PRINTS Manganese superoxide dismutase signature 201 213 IPR001189 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 PRINTS Manganese superoxide dismutase signature 105 118 IPR001189 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 Gene3D - 123 240 IPR036314 -
Cca03g00084 383 MobiDBLite consensus disorder prediction 341 383 - -
Cca03g00084 383 Gene3D Ribosomal protein S26e 255 368 IPR038551 -
Cca03g00084 383 ProSitePatterns Manganese and iron superoxide dismutases signature. 203 210 IPR019833 GO:0004784|GO:0006801|GO:0046872
Cca03g00084 383 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), N-terminal domain 39 123 IPR036324 -
Cca03g00084 383 Gene3D Fe,Mn superoxide dismutase (SOD) domain 59 122 IPR036324 -
Cca03g00084 383 SUPERFAMILY Fe,Mn superoxide dismutase (SOD), C-terminal domain 126 235 IPR036314 -
Cca03g00084 383 ProSitePatterns Ribosomal protein S26e signature. 327 334 IPR000892 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00084 Cca-Chr3 1191927 1201579 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00084 255 370 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 84.483 3.21e-68 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00084 K04564 - gmx:100785490 443.351