Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00083 ATGACGTTCAAGCGCAGGAATGGCGGTCGCAACAAACACGGCCGCGGCCACGTCAAATTCATTCGATGCTCCAACTGCGGCAAATGCTGCCCTAAGGACAAGGCTATCAAGAGGTTTTTGGTGAGGAACATTGTTGAACAGGCTGCAGTCAGAGATGTGCAGGAAGCCTGTGTCTATGAACAATACACTCTTCCCAAACTGTATGTGAAGATGCAGTACTGTGTTTCCTGTGCCATCCACTCTCATGTTGTGAGGGTTCGATCCCGCACTGACAGGAGGAAGCGTGATCCTCCACAGCGATTCATCAGGCGCAGGGATGATGCACCAAGGCCTGGTCAGCCTGGTCAAGCCCCACGTCCTGCTGGAGTAGGAGCCCCTGCCCGTGCTTAA 390 0.5385 MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRDPPQRFIRRRDDAPRPGQPGQAPRPAGVGAPARA 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00083 129 ProSitePatterns Ribosomal protein S26e signature. 73 80 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca03g00083 129 PANTHER 40S RIBOSOMAL PROTEIN S26 1 128 - -
Cca03g00083 129 PANTHER 40S RIBOSOMAL PROTEIN S26 1 128 IPR000892 GO:0003735|GO:0005840|GO:0006412
Cca03g00083 129 MobiDBLite consensus disorder prediction 86 129 - -
Cca03g00083 129 MobiDBLite consensus disorder prediction 90 110 - -
Cca03g00083 129 Gene3D Ribosomal protein S26e 1 114 IPR038551 -
Cca03g00083 129 Pfam Ribosomal protein S26e 1 106 IPR000892 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00083 Cca-Chr3 1184159 1185843 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00083 1 116 Cytoplasmic Ribosomal Protein Gene Family AT2G40590 84.483 7.13e-70 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00083 K02976 - gmx:100781822 213.772