Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00072 ATGGTGGTTGAAATCATTGATCTTTCAGACTCCCCTCCCTCGTCACCTAGGTCATCTAACAATGCAACAACAAGACTTATCAATTTTAATTCTGTTTCTGTTGAAAAAGAACAATTTGAGAAATTTCCGATACCCTTAATGGGTTGCACAAATCCCAACTTGTACCATACCGACCAGCCACAGACTAGTCTATGGCCAATTGCAAAATATACTTGTGAGCCCTCTGAAGTTGCTACTTTTCAACCCAACATGCCAAGGGCTGCTACAATACTTGAACCAACACCTACATCGAACACTTACCTGTCCCCTGGTGGAGCTGGATTGAAGGAACCCTGGACTCACAAAGAGCACGAGTTATTTATGAGGGGACTAATCAAGTATGGAAAAGGGTCTTGGAGCCAAATTGCTGAACACTTTGTGCAAAATAAGACACCACAAGAAGTTGAGAGCTATGCTGCATGGTTCTTCAAGCATCAACCATCCACAGCTAGCCTCATGTCCTTAAACAACAATCTCATGGCTGCATCTGCATCTGTCTCAGACTCTATGTCCATGGTTGTTAATGAGCCACAACACACCCACATGTTTTTCCCAGAGAATGCTTCTTTCCTTCTGGCCCCATCATATGGAGAAGCTAGTAGCAACACCAACACCAACACCGTCATGCATGGATTCCCAATGCAGACAAGTGGTGCAAACACTTCCATGAATGCTAGTGATAATGGAGAAGTTGATTTGGAGTTGCGTTTGGGTTTATGCCAGCCAGACTCAGATATGTTTAATGCTTGCATGGATGACAAATATATCTAG 810 0.4333 MVVEIIDLSDSPPSSPRSSNNATTRLINFNSVSVEKEQFEKFPIPLMGCTNPNLYHTDQPQTSLWPIAKYTCEPSEVATFQPNMPRAATILEPTPTSNTYLSPGGAGLKEPWTHKEHELFMRGLIKYGKGSWSQIAEHFVQNKTPQEVESYAAWFFKHQPSTASLMSLNNNLMAASASVSDSMSMVVNEPQHTHMFFPENASFLLAPSYGEASSNTNTNTVMHGFPMQTSGANTSMNASDNGEVDLELRLGLCQPDSDMFNACMDDKYI 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00072 269 PANTHER MYB-LIKE DNA-BINDING DOMAIN PROTEIN 20 251 - -
Cca03g00072 269 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 20 251 - -
Cca03g00072 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 160 IPR017930 -
Cca03g00072 269 ProSiteProfiles SANT domain profile. 107 160 IPR017884 -
Cca03g00072 269 CDD SANT 111 152 IPR001005 -
Cca03g00072 269 SUPERFAMILY Homeodomain-like 111 159 IPR009057 -
Cca03g00072 269 SMART sant 108 158 IPR001005 -
Cca03g00072 269 ProSiteProfiles Myb-like domain profile. 109 151 IPR001005 -
Cca03g00072 269 Gene3D - 110 160 - -
Cca03g00072 269 Pfam Myb-like DNA-binding domain 109 151 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00072 Cca-Chr3 1021325 1022665 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca03g00072 Myb_DNA-binding 1.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00072 - - gsj:114414101 284.648