Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00068 ATGGCCATTGTAGCAACCTCTGCCATCTCTCTTTTCTTCTTTCTTCTTAATCTATGCCTCCGAGGTACTTATGGTAACTATGGAGGAGGATGGCAAGGTGGTCATGCCACATTTTATGGTGGGGGAGATGCATCAGGCACAATGGGTGGGGCTTGTGGTTATGGAAACTTGTACAGCCAAGGGTATGGTACTAACACTGCAGCACTCAGCACAGCACTATTCAACAATGGCTTGAGTTGCGGTTCTTGCTATGAGATGAGATGTGACAGTGACCCCAAATGGTGCCTTCCCGGTAGCATTATCGTCACTGCCACAAACTTCTGCCCTCCTAACTTTGCATTGTCTAACAGCAATGGTGGCTGGTGCAACCCTCCTTTGCAACACTTTGATCTGGCTGAGCCTGCTTTCTTGCAAATTGCTCAATACAAAGCTGGAATTGTTCCTGTTTCCTTCAGAAGAGTCCCCTGTGTGAAGAAAGGAGGAATCAGGTTCACCATCAATGGTCACTCATACTTCAACTTGGTTCTGATCACAAATGTTGGTGGTGCTGGAGATGTTCACTCTGTGTCCATCAAAGGGTCTAGGACAGGGTGGCAAACCATGTCAAGAAACTGGGGGCAGAATTGGCAAAGCAATGCCTATCTCAATGGCCAAAGCCTCTCTTTTCAGGTCACCACAAGTGATGGCAGGACTATCACTAGCAACAACATTGTGCCTGCTAAATGGCAATTTGGACAGACATTTGAAGGGGCACAATTCTAG 762 0.4711 MAIVATSAISLFFFLLNLCLRGTYGNYGGGWQGGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEMRCDSDPKWCLPGSIIVTATNFCPPNFALSNSNGGWCNPPLQHFDLAEPAFLQIAQYKAGIVPVSFRRVPCVKKGGIRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQTMSRNWGQNWQSNAYLNGQSLSFQVTTSDGRTITSNNIVPAKWQFGQTFEGAQF 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00068 253 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cca03g00068 253 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cca03g00068 253 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cca03g00068 253 PRINTS Expansin/Lol pI family signature 144 160 IPR007118 GO:0005576
Cca03g00068 253 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576
Cca03g00068 253 PRINTS Expansin/Lol pI family signature 236 250 IPR007118 GO:0005576
Cca03g00068 253 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 171 250 IPR007117 -
Cca03g00068 253 Pfam Expansin C-terminal domain 162 239 IPR007117 -
Cca03g00068 253 Gene3D - 160 253 IPR036749 -
Cca03g00068 253 SMART dpbb_1 66 151 IPR007112 -
Cca03g00068 253 SUPERFAMILY PHL pollen allergen 158 250 IPR036749 -
Cca03g00068 253 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 100 110 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 119 136 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 136 149 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 160 172 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 172 193 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 207 228 IPR002963 GO:0009664
Cca03g00068 253 PRINTS Expansin signature 236 252 IPR002963 GO:0009664
Cca03g00068 253 PANTHER EXPANSIN 5 253 - -
Cca03g00068 253 PANTHER EXPANSIN-A15 5 253 IPR002963 GO:0009664
Cca03g00068 253 Pfam Lytic transglycolase 66 151 IPR009009 -
Cca03g00068 253 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 161 IPR007112 -
Cca03g00068 253 Gene3D - 21 156 IPR036908 -
Cca03g00068 253 SUPERFAMILY Barwin-like endoglucanases 12 179 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00068 Cca-Chr3 972279 975136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00068 10 253 Expansin Gene Family AT2G40610 80.000 1.16e-147 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00068 - K20628 gmx:547673 493.426