Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00067 ATGTCCTTCCCTCACCACCGTCGATCCCAATCGGAGCTGCATTTCCGGATCTCCGACGACTTCGACCTCGAGATCGATCTCTCTCCGCCGCATTTCCAAGatcccactccgctctgccaatccccatccaaaccccaatcTCCGCCGCCCGACCCCGCCCACCGCCGGAGCAACTCCGCCGACGCCTCCTCCTCCTCCTTGCTCGAAGGCATCGAGGCCAAGAAGGCCTTGTCCCCCGACAAGCTCGCTCAATTGTGGACCGTTGATCCCAAACGAGCCAAGAGGATTCTGGCTAACCGCCAATCCGCCGCGCGCTCTAAAGAGAGGAAGGCGTGTTACGTTTCGGAGCTTGAGAGAAAATTTCAGTCTCTTCAAACGGAAGCAACCGCTCTCTCTGCTCAATTAAGTCTTTTCCAGAGAGATACATCTGGTCTGACTACTGAAAATACGGAGTTGAAGCTTCGGTTACAAGCCATGGAACAGCAAGCTAAGCTATGTGATGCTCTAAATGAAGCACTGAAGAAAGAAGTTGATAGGCTCAGGTTTGCAACTGGAGAGATGGCAATGCATACTGATAGTTATGGTTTGGGAATGCATCAACTTGCATATAATCAACCTTCGTTATTCTCACACCAGTCACAACATAGGCAGAGCGAACATCAAGCCATGCAAATGCCGCAGTTTCATTCACTATCATCCAATGGACTGGACATAGGCAACGGGGTTTCTCATGTTCCGGTGCCAGATTGTTCCTCCATTTCTGTTAATAAAATCAACAATCCCTTTTGA 789 0.4766 MSFPHHRRSQSELHFRISDDFDLEIDLSPPHFQDPTPLCQSPSKPQSPPPDPAHRRSNSADASSSSLLEGIEAKKALSPDKLAQLWTVDPKRAKRILANRQSAARSKERKACYVSELERKFQSLQTEATALSAQLSLFQRDTSGLTTENTELKLRLQAMEQQAKLCDALNEALKKEVDRLRFATGEMAMHTDSYGLGMHQLAYNQPSLFSHQSQHRQSEHQAMQMPQFHSLSSNGLDIGNGVSHVPVPDCSSISVNKINNPF 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00067 262 Gene3D - 90 142 - -
Cca03g00067 262 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 89 152 IPR004827 GO:0003700|GO:0006355
Cca03g00067 262 Coils Coil 156 176 - -
Cca03g00067 262 PANTHER BZIP TRANSCRIPTION FACTOR 18 2 29 - -
Cca03g00067 262 PANTHER BZIP TRANSCRIPTION FACTOR 18 51 236 - -
Cca03g00067 262 Coils Coil 114 134 - -
Cca03g00067 262 MobiDBLite consensus disorder prediction 25 66 - -
Cca03g00067 262 CDD bZIP_plant_RF2 92 141 IPR044759 GO:0003700|GO:0006355
Cca03g00067 262 SUPERFAMILY Leucine zipper domain 91 145 IPR046347 GO:0003700|GO:0006355
Cca03g00067 262 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 51 236 - -
Cca03g00067 262 SMART brlzneu 87 151 IPR004827 GO:0003700|GO:0006355
Cca03g00067 262 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 2 29 - -
Cca03g00067 262 Pfam bZIP transcription factor 91 148 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00067 Cca-Chr3 927984 931310 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00067 4 228 bZIP Transcription Factor Family AT2G40620 54.054 1.09e-72 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca03g00067 bZIP_1 1.3e-08 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00067 - - gmx:100807712 366.696