Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00063 ATGTATACAAGTGAAAGACAGTTAATGAGGCTAAGATTAGCATATCTAAGGGCAGTCCTCAACCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTCATCAGTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCCACCATATGCTCTTGGGAAGTGGCACTTCTCTGTTTAGTGGTTGTCCCGATTATTCTTATAATTGGGGCAACTTACACAAAGAAAATGAACAGCATTTCAACCACCAAAATGCTTTTCCATTCTGAAGCGACATCTATGATAGAGCAGACAATATCACATATAAAAACAGTTTATGCTTTTGTTGGAGAGAGTTCTGCAATCAAATCTTTTACAGAGAACATGGAAAAACAATACATTATAAGCAAAGGGGAGGCACTTGTGAAAGGAGTTGGGACAGGGATGTTTCAAACAGTGAGCTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCTGTTGTGGTCAGAGCCGGAAGAGCAACAGGAGGAGACATAATAGCtgcagtgcagggataa 609 0.3974 MYTSERQLMRLRLAYLRAVLNQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATICSWEVALLCLVVVPIILIIGATYTKKMNSISTTKMLFHSEATSMIEQTISHIKTVYAFVGESSAIKSFTENMEKQYIISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVRAGRATGGDIIAAVQG 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00063 202 PANTHER OS08G0153200 PROTEIN 1 200 - -
Cca03g00063 202 CDD ABC_6TM_Pgp_ABCB1_D1_like 1 200 - -
Cca03g00063 202 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 202 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g00063 202 SUPERFAMILY ABC transporter transmembrane region 2 200 IPR036640 GO:0005524|GO:0016021
Cca03g00063 202 Pfam ABC transporter transmembrane region 2 198 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g00063 202 Gene3D ABC transporter type 1, transmembrane domain 1 202 IPR036640 GO:0005524|GO:0016021
Cca03g00063 202 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 1 200 IPR039421 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00063 Cca-Chr3 894162 895448 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00063 1 198 Calmodulin-binding Proteins AT2G36910 37.879 1.09e-40 145