Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00062 ATGTCCTCCGAAGACATAACTCTCGTCACCGACCAGAGGATCGAAAACGGTCTCAACTCCCCTCTCGTCTTCCAAGACAACCCTCTCCGCTTCAGTTGCCCCGACCCGACCCGTCGGGTCCCCGACCGGGGCCCAAAATCCCGCGAACTCGGCACATTCATCGACGACAAGATGTTCATCGATCGCGACCGCTTCTTCGCCGCCCAGGGCGCCGATTTccgccgcgccaacgtctacgccgactgctccgcccgccgcgacgcgcccgacgcccgCAATTGGAGCGCCAGcgaggacgacgattccgatgacgaagatgacgacgatgatgacgacgacgacgccgaAGTAGAAGGACTCGTTGGCGACGGAACCAAAACCGACGTTAACAACAACAACGGCGATGGTAATTTGCCTGCTGTTGCGAACGGGAAAGCCCACGCTTATGTTTCCGGAAGAGAACTATTGGTGAAGGATGGTGGAGACATTGGGCAATTGGTGCATAACAATGTGAGTGGTGGTGATGAGGATCATCGGCAAGAGGGGTTAGGTAAGTCTCAGAATTCTGGTACTGTTGCTGAGACTGACTGTGAGGAGTACTATTCGCACTATCTTCAAGGTGGTGAAGGGGCTTCTGTGCAGAAAGTTATGGTGGATGACAATGGTTGCGGGTTTAGTGGGAGAAAGGATGTTATGTATTCCAGCGAGTCAGGGGAGTCACTCAGGGCAATTCTTTCAGATCCTGTTACGGGTGCTCTTATGGATGATGCGATGATATTACCATGTGGACATTCATTTGGTGGAGGTGGAATACAGCATGTTATTAGAATGAAAGCTTGCTGCTCTTGTTCTCAACCCACGACTGAAGAATTAATATCTCCAAACCTATCACTTCGAGCTGCTGTGCAGGCATATCGTCGGGAAGAGGAGACACAGTTTTACCGGTCACCTAAAAGAAGAAGAGAGAGATTTGATCAGGGTGGTTTTGGAGATGCAGCTGTTATGGAAACATCGAGGAGTAGAGGTGTTCAGTTTCCATTTGCTGTCATGGACCGGGTCATCATAAAGGTAGCGTGTGAACAGGCTTGA 1089 0.4472 MSSEDITLVTDQRIENGLNSPLVFQDNPLRFSCPDPTRRVPDRGPKSRELGTFIDDKMFIDRDRFFAAQGADFRRANVYADCSARRDAPDARNWSASEDDDSDDEDDDDDDDDDAEVEGLVGDGTKTDVNNNNGDGNLPAVANGKAHAYVSGRELLVKDGGDIGQLVHNNVSGGDEDHRQEGLGKSQNSGTVAETDCEEYYSHYLQGGEGASVQKVMVDDNGCGFSGRKDVMYSSESGESLRAILSDPVTGALMDDAMILPCGHSFGGGGIQHVIRMKACCSCSQPTTEELISPNLSLRAAVQAYRREEETQFYRSPKRRRERFDQGGFGDAAVMETSRSRGVQFPFAVMDRVIIKVACEQA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00062 362 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 62 356 - -
Cca03g00062 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 240 311 IPR013083 -
Cca03g00062 362 ProSiteProfiles U-box domain profile. 240 312 IPR003613 GO:0004842|GO:0016567
Cca03g00062 362 MobiDBLite consensus disorder prediction 84 136 - -
Cca03g00062 362 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 62 356 - -
Cca03g00062 362 MobiDBLite consensus disorder prediction 97 118 - -
Cca03g00062 362 SUPERFAMILY RING/U-box 239 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00062 Cca-Chr3 887896 892705 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00062 192 356 Plant U-box Gene Family AT5G05230 52.326 1.07e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00062 - - gmx:100791099 575.089