Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00061 ATGAAACACAGCGAGAAGCGTCTCAAGGCTTCCAAAGAATTGGTGGATTTCATGAAGCTTTCAAAGGACAACATGGCTCAAGAACCATCGAGTTCTAAGGTGGTTGATTCACCCAATTTTTACGCTAAAGGTGATGATGAGAATAATAATGCAAAGACTTTTTCATGCAACTATTGCAAGAGGGAATTCTCTTCATCACAAGCTTTGGGAGGACACCAAAACGCTCATAAACAAGAACGTGCCCTAGCGAAACGTCGTCAAGGGTTTGATGATGGTGGTTTTGGGCACTACCCTTATTATCCTTATCCAACTTTTTACAACTCTCATTCCCTTTATGGAGGGTCTTTCAATAGGGCACTTGGAGTTCGGACAGATTCCATGATTCACAAGCATTCTTGGACTCCACGGTATGATCACACTTGGCTAAAGAAGAATCCTCATGGGGTGTCAAGTTCTTCATTATTTGATGGGTTTGGAATTATGAAAGGTGATGCAAGTGCGGGTTTAAGGCCAGAATATGGTAATGCCAATGTTGGAACACTGTCTCTTTTTGAAAAGGGTTTCACCAATTCATCAAGTCAAATCGAGACCACACCAACAGTCGCAGCAAGAATTGATGCTCATCCTTCCATGCCACAAGAAACATCCAAAGAAGCATCTCTCAATCTTGATTTGTCACTTAAGCTTTAA 690 0.4159 MKHSEKRLKASKELVDFMKLSKDNMAQEPSSSKVVDSPNFYAKGDDENNNAKTFSCNYCKREFSSSQALGGHQNAHKQERALAKRRQGFDDGGFGHYPYYPYPTFYNSHSLYGGSFNRALGVRTDSMIHKHSWTPRYDHTWLKKNPHGVSSSSLFDGFGIMKGDASAGLRPEYGNANVGTLSLFEKGFTNSSSQIETTPTVAARIDAHPSMPQETSKEASLNLDLSLKL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00061 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 81 IPR013087 -
Cca03g00061 229 Gene3D Classic Zinc Finger 29 91 - -
Cca03g00061 229 MobiDBLite consensus disorder prediction 24 41 - -
Cca03g00061 229 PANTHER ZINC FINGER PROTEIN JAGGED 24 229 IPR045320 GO:0003700
Cca03g00061 229 SUPERFAMILY beta-beta-alpha zinc fingers 51 81 IPR036236 -
Cca03g00061 229 Pfam C2H2-type zinc finger 54 78 - -
Cca03g00061 229 MobiDBLite consensus disorder prediction 22 41 - -
Cca03g00061 229 PANTHER AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN, PUTATIVE-RELATED 24 229 - -
Cca03g00061 229 MobiDBLite consensus disorder prediction 209 229 - -
Cca03g00061 229 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00061 Cca-Chr3 877395 878084 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00061 35 132 C2H2 Transcription Factor Family AT5G10970 49.000 6.05e-19 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g00061 zf-C2H2_6 1.5e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00061 - - gmx:102668197 266.929