Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00060 ATGCGAGCGTTATTTTCGACCATGAGAGTTTTTGTTTTTCTTGTGTGGTTCTGTGTGGCGGCGGCGGCGGTGAACCCTTCCCTGAACGACGACGTTTTGGGGCTGATTGTGTTCAAGGCTGACATACGAGATCCGAAGGGGACGCTGGCGTCTTGGAACGAGGACGACGAGAATGCGTGTGGGGCTGGTTGGGTTGGGGTGAAGTGCAACCCTAGATCCAACAGGGTGGTGGAGGTTAACCTAGATGGATTTTCTCTCTCTGGGAGAATAGGTCGAGGGTTGCAAAGGTTGCAGTTTTTGAGGAAGCTTTCTCTGGCGAATAATAACCTCACTGGGGGGATAAACCCCAACATTGCTAGAATAGATAACCTTAGGGTCATCGACTTGAGTGGGAACAGTCTCTCAGGGGAGGTGTCTGAGGATGTTTTCCGACAATGTGGGTCTCTCAGGACTTTGTCCTTGGCCAGGAACAGGTTTTCTGGGAGCATTCCCTCTACTTTGGGGGCTTGTGCTGCTCTTGCTGCTATTGACCTTTCCAGTAACCAGTTTTCTGGTTCTGTCCCTTCTGGGGTTTGGTCTTTGAGTGCTCTCAGGTCTCTGGACTTGTCTGATAACTTGTTGGAGGGTGAGATTCCTAAGGGGTTTGGGGCTATGAAGAATTTGAGGAGTGTTAGCGTGGCGAGGAATCGGATGACCGGGAGTGTTCCCGATGGGTTTGGGAGCTGTTTGCTTTTGAGGTCCATTGATTTGGGGGATAATTCCTTTTCTGGGAGCATTCCTGGTGATTTTAAGGAGCTTTCATTGTGTGGTTACCTTAGTTTGCGAGGAAATGCTTTCTCAGGAGAGGTTCCTGAGTGGATTGGAGAGATGAGAGGGCTTGAGACGTTGGACCTTTCCAACAACGGGTTGACTGGTCAGGTGCCCAAGTCAATTGGGAATCTTCAGTCGTTGAAGATGTTGAATTTTTCAGGAAATGGTTTCACTGGTAATCTGCCAGAGTCAATGGCGAGTTGCACCAAGCTTTTGACGTTGGATGTCAGCCGGAATTCGTTGTCCGGATGGCTTCCATTGTGGATTTTCAAGTCGGATTTGGACAAGGTTTTGGTGTCGGAAAAGGGGAGTGATAGGGTGAAAAGCCCTTTGTTTGCCTTGGCTGAAGTCTCGGTTCAAAGTCTTCAAGTGTTGGATTTGTCTCACAATGCATTTTCTGGTGAAATCACAGATGCTGTTGCAGGTCTAACCAGCTTGCGGGTTTTGAATTTGGCAAATAACTCTCTTAGAGGTCCTATACCAGCTGCAGTTGGTGAATTGAAAACATGTGCTAGTCTTGATCTGAGCTATAATAAGCTGAATGGAAGCATACCTTGGGAAATAGGAGGAGCTGTGTCCTTGAAAGAACTGGTATTGGAAAGGAACTTCCTAATTGGGAAAATTCCAACTTCAATTGAGAACTGCTCTATGCTAACAACTCTGATTCTGTCCCAGAACAGGCTGAGTGGCCAAATACCTGGCGCAGTTGCAAAACTTACCAACCTGCAAACTGTGGACTTATCATTTAACAACCTTACTGGGACCCTTCCTAAGCAATTGGCCAACCTTGCCAATCTTTTTTCATTCAATTTATCTCACAACAACCTTCAGGGTGAACTGCCGGCTGGTGGTTTTTTCAACACCATTGCACCTTCCTCTGTTTCTGGCAATCCATCTCTTTGTGGCTCTGCAGTGAACAGATCATGCCCTGCTGTAATGCCTAAGCCTATTGTTCTAAATCCCAACACTTCTACTGACGCTGGCCCGGGTACACTGCCTTCAAATTTGGGTCACAAAAGAATCATTCTCAGCATTTCTGCAATCATTGCCATTGGTGCAGCTGCTGTCATTGTAATTGGTGTTATTAGCATCACTGTTCTCAATCTCCGTGTTCGCTCCTCTGAATCCCGGGATGCAGCTGCCATTGCATTTTCTGCAGGGGATGAATTCAGCCATTCCCAAACTACAGATGCCAACTCTGGCAAGCTTGTTATGTTTTCAGGTGAGCCTGATTTTAGTTCAGGTGCGCATGCTTTGCTTAATAAGGATTGTGAGCTTGGGCGTGGAGGATTTGGTGCAGTGTACCAAACGGTTCTCAGAGATGGGCACTCAGTTGCTATAAAGAAGCTCACTGTATCAAGCCTTGTCAAGTCTCAAGAAGATTTTGAAAGAGAAGTGAAGAAATTAGGAAAAATCAAACACCAAAACCTTGTGGAACTTGAGGGTTATTATTGGACACCATCACTGCAGCTCCTCATATACGAGTTTGTCTCTGGTGGTAGTCTCTATAAGCATCTTCATGAAGGATCCGGTGGAAACTTCCTCTCATGGAATGAGAGATTTAATGTGATTCTTGGAACCGCAAAGGCCTTGGCACACTTGCACCATTCCAACATTATTCACTACAACATTAAGTCAACCAATGTCCTTCTTGATAGCTATGGTGAACCAAAAGTAGGGGATTTTGGCCTAGCGAGGCTGTTGCCAATGCTTGATCGATACGTTCTGAGCAGCAAAATTCAGAGCGCACTTGGCTACATGGCACCAGAGTTTGCCTGCAAAACGGTGAAAATCACCGAAAAATGTGATGTATATGGGTTTGGTATCTTGGTCTTGGAGATTGTTACTGGGAAGAGGCCTGTTGAATACATGGAGGATGACGTGGTGGTGCTTTGTGACATGGTTAGAGGGGCGTTGGAAGAAGGCAGGGTGGAGGAATGCATTGATGAGAGACTCCAAGGGAAGTTCCCAGCAGAAGAAGCTATTCCTGTGATGAAACTAGGCTTAATATGTACTTCTCAAGTGCCATCTAATAGGCCTGACATGGGAGAGGTAGTTAACATATTGGAGCTGATAAGATGTCCCTCTGAAGGACAAGAAGAATTGGGATGA 2922 0.4637 MRALFSTMRVFVFLVWFCVAAAAVNPSLNDDVLGLIVFKADIRDPKGTLASWNEDDENACGAGWVGVKCNPRSNRVVEVNLDGFSLSGRIGRGLQRLQFLRKLSLANNNLTGGINPNIARIDNLRVIDLSGNSLSGEVSEDVFRQCGSLRTLSLARNRFSGSIPSTLGACAALAAIDLSSNQFSGSVPSGVWSLSALRSLDLSDNLLEGEIPKGFGAMKNLRSVSVARNRMTGSVPDGFGSCLLLRSIDLGDNSFSGSIPGDFKELSLCGYLSLRGNAFSGEVPEWIGEMRGLETLDLSNNGLTGQVPKSIGNLQSLKMLNFSGNGFTGNLPESMASCTKLLTLDVSRNSLSGWLPLWIFKSDLDKVLVSEKGSDRVKSPLFALAEVSVQSLQVLDLSHNAFSGEITDAVAGLTSLRVLNLANNSLRGPIPAAVGELKTCASLDLSYNKLNGSIPWEIGGAVSLKELVLERNFLIGKIPTSIENCSMLTTLILSQNRLSGQIPGAVAKLTNLQTVDLSFNNLTGTLPKQLANLANLFSFNLSHNNLQGELPAGGFFNTIAPSSVSGNPSLCGSAVNRSCPAVMPKPIVLNPNTSTDAGPGTLPSNLGHKRIILSISAIIAIGAAAVIVIGVISITVLNLRVRSSESRDAAAIAFSAGDEFSHSQTTDANSGKLVMFSGEPDFSSGAHALLNKDCELGRGGFGAVYQTVLRDGHSVAIKKLTVSSLVKSQEDFEREVKKLGKIKHQNLVELEGYYWTPSLQLLIYEFVSGGSLYKHLHEGSGGNFLSWNERFNVILGTAKALAHLHHSNIIHYNIKSTNVLLDSYGEPKVGDFGLARLLPMLDRYVLSSKIQSALGYMAPEFACKTVKITEKCDVYGFGILVLEIVTGKRPVEYMEDDVVVLCDMVRGALEEGRVEECIDERLQGKFPAEEAIPVMKLGLICTSQVPSNRPDMGEVVNILELIRCPSEGQEELG 973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00060 973 Gene3D Ribonuclease Inhibitor 29 189 IPR032675 -
Cca03g00060 973 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 971 - -
Cca03g00060 973 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC2 10 971 - -
Cca03g00060 973 Pfam Protein tyrosine and serine/threonine kinase 692 958 IPR001245 GO:0004672|GO:0006468
Cca03g00060 973 SUPERFAMILY L domain-like 263 606 - -
Cca03g00060 973 Gene3D Ribonuclease Inhibitor 387 582 IPR032675 -
Cca03g00060 973 Gene3D Ribonuclease Inhibitor 190 285 IPR032675 -
Cca03g00060 973 Gene3D Ribonuclease Inhibitor 286 371 IPR032675 -
Cca03g00060 973 Pfam Leucine rich repeat N-terminal domain 29 70 IPR013210 -
Cca03g00060 973 PRINTS Leucine-rich repeat signature 293 306 - -
Cca03g00060 973 PRINTS Leucine-rich repeat signature 413 426 - -
Cca03g00060 973 Gene3D Transferase(Phosphotransferase) domain 1 767 971 - -
Cca03g00060 973 ProSiteProfiles Protein kinase domain profile. 690 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00060 973 SMART LRR_typ_2 121 145 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 389 412 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 533 557 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 413 437 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 146 170 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 218 241 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 509 532 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 194 217 IPR003591 -
Cca03g00060 973 SMART LRR_typ_2 290 314 IPR003591 -
Cca03g00060 973 Pfam Leucine Rich Repeat 463 485 IPR001611 GO:0005515
Cca03g00060 973 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Cca03g00060 973 Gene3D Phosphorylase Kinase; domain 1 682 766 - -
Cca03g00060 973 SUPERFAMILY L domain-like 60 357 - -
Cca03g00060 973 CDD STKc_IRAK 696 962 - -
Cca03g00060 973 SUPERFAMILY Protein kinase-like (PK-like) 694 957 IPR011009 -
Cca03g00060 973 Pfam Leucine rich repeat 488 546 IPR001611 GO:0005515
Cca03g00060 973 Pfam Leucine rich repeat 291 351 IPR001611 GO:0005515
Cca03g00060 973 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00060 Cca-Chr3 866489 870156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00060 9 973 Receptor kinase-like Gene Family AT3G56370 67.490 0.0 1281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Cca03g00060 PK_Tyr_Ser-Thr 8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00060 - - gmx:100791629 1726.06