Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00057 ATGGCCGctccttcttcttcttcttcAACTTGGGTCATGGAAACTTCTGATGTTCCTCATGTTTTGGCCGTTGATGACAACCTTATTGATCGCAAACTCGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGTCACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTATTGGGCTTGACAAGTGGGGGACAGAACACCATGAATGGTAGATCCAAAGTAAATTtggtaatcacagactattgcatgccagggatgacgggctacgagctacttaagaaaattaagGAATCATCTGTAATGAAGGAGGTTCCAGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATCCTAAAGCCCCTCAAACAATCTGATGTAAAAAAACTGACATGTCAGTTAATGAATTGTGAGGTTTGA 456 0.3465 MAAPSSSSSTWVMETSDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALELLGLTSGGQNTMNGRSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFILKPLKQSDVKKLTCQLMNCEV 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00057 151 Gene3D - 20 149 - -
Cca03g00057 151 SUPERFAMILY CheY-like 19 147 IPR011006 -
Cca03g00057 151 SMART REC_2 19 143 IPR001789 GO:0000160
Cca03g00057 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 149 IPR045279 GO:0009736
Cca03g00057 151 Pfam Response regulator receiver domain 21 141 IPR001789 GO:0000160
Cca03g00057 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 8 149 - -
Cca03g00057 151 CDD REC_typeA_ARR 21 142 - -
Cca03g00057 151 ProSiteProfiles Response regulatory domain profile. 20 147 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00057 Cca-Chr3 837507 839484 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00057 6 149 Response Regulator Gene Family AT3G56380 68.493 2.07e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Cca03g00057 Response_reg 2.1e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00057 K14492 - gmx:100778707 274.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01126 05 28486338 28487691 Cca03g00057 03 837507 839484 PCT