Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00055 ATGTCAAAGCCAAAACACCTAGAAACAATGGAAGAGGTAATTAATTCGATTCGACGCGCTTCTATGTTGGCTCAAAACCTTGAACAAAACCTACCCAACTTGGCGAACCAGCCAACTATGATGTCCTTGTCCATTGATGAGATAACTGAGGCTTTCACTGCTGCAAAACAAAAGCTGTTACTAATCTCCCGACAGAACCAAACTTCTGAATATGAAACACAACGGCCTCAGGAGATGGATGCCACTCTCATGCATGAATGGCTAAGGTCTAGTCATGCACTAACAATGGATCAGTTGTTTCAAGTGCATGCTGCTAGGAGCACTTTGCAGATTGGTGAAATGGGTGGAAGAGATGGTGAAGATTCTGAGAAAACCATGGTATCTGAAGGAGAGGTACAAGGAATCGTCGCATCATCCTCACGATCACGAAAAAGAAGCAAGGACGCTAATCAAGAGAAGGAAAAAATTATGGTTCCTGCCCCACAGTTTGGAAACACAGAGATGCCACCGGAAGATGGCTTCACTTGGAGGAAATATGGTCAGAAAGAAATACTTGGCTCCAAGTACCCAAGGAGTTACTACAGGTGCACACACCAAAAGTTATATGAATGCCAAGCGAAGAAGCAAGTGCAAAGACTTGATGACAATCCTAACATATTTGAAGTAACATACAGAGGGAAACACACATGCCACATGTCCTCCAcagcaccatcatcatcatcatcaCTTCCACTACAACAACTACTTGTGGACATGACACATAACAGTAACACCATTTCCTCTCAGTTGTCTCCTAGGATGAATTACCTCAGCCTCCAAACTGGTGGGGCCGCCGCCACCAGTAGTGGCAGTGGTGGAGCCTCCACTTCAAGATACGGTGGTGATTATCCTGTGGTGGATATGGCTGATGCTATGTTCAACTCTGGTAGCAGCAGCGGCAATAACAGCATGGAATTTCTCTTCTCTCCCGCTGAAGATAAAAAGGATCCAAACTAA 996 0.4378 MSKPKHLETMEEVINSIRRASMLAQNLEQNLPNLANQPTMMSLSIDEITEAFTAAKQKLLLISRQNQTSEYETQRPQEMDATLMHEWLRSSHALTMDQLFQVHAARSTLQIGEMGGRDGEDSEKTMVSEGEVQGIVASSSRSRKRSKDANQEKEKIMVPAPQFGNTEMPPEDGFTWRKYGQKEILGSKYPRSYYRCTHQKLYECQAKKQVQRLDDNPNIFEVTYRGKHTCHMSSTAPSSSSSLPLQQLLVDMTHNSNTISSQLSPRMNYLSLQTGGAAATSSGSGGASTSRYGGDYPVVDMADAMFNSGSSSGNNSMEFLFSPAEDKKDPN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00055 331 Gene3D WRKY domain 160 233 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00055 331 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 270 IPR044810 GO:0003700
Cca03g00055 331 SUPERFAMILY WRKY DNA-binding domain 167 232 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00055 331 MobiDBLite consensus disorder prediction 113 154 - -
Cca03g00055 331 Coils Coil 10 37 - -
Cca03g00055 331 SMART WRKY_cls 170 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00055 331 ProSiteProfiles WRKY domain profile. 171 233 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00055 331 PANTHER WRKY TRANSCRIPTION FACTOR 55 10 270 - -
Cca03g00055 331 MobiDBLite consensus disorder prediction 310 331 - -
Cca03g00055 331 Pfam WRKY DNA -binding domain 171 230 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00055 Cca-Chr3 811717 814676 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00055 10 331 WRKY Transcription Factor Family AT2G40740 37.982 6.59e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g00055 WRKY 7.2e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00055 - - gsj:114410180 464.536