Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00054 ATGATGAGTATTCTCTTCCCTCCCACTTCCTCAGCCAAGGGGAAAAGGCTCATCAGAGAACTTGTTCAGGGTCAGGATTATGCCACTCAGCTCAAGTTTCTGCTTCAGAACCCTATTGGGCCTCGTGGCTTCCTTTCTGCTAAGGAACTAGTGTCTAATGTTCTCAGATCTTTCTCTCAGACTCTCTCTGTCTTGACTTCTTCTGATGATGATGACCACGTTTCTCAGAATCTCGGAGAAGATGCCTCGCAGCTTGTGGCTTCCAGCATTAATCCGAGGTCTGAGGATTCCACTGAGAGTAGGAAGGGATCATTGCCCCTTGCAAAGGATCGGAGAGGGTCCTACAAAAGAAGGAGGACTGAACAGACATGGACCATTGTTTCTCAAACAAATGATGATAATCATGCATGGAGAAAGTACGGACAAAAGGAGATCCTAAATTCTCAATTTCCCAGGAGTTACTTTAGGTGCACTAGGAAGTATGAACAAGGTTGCCGAGCAACGAAACAGGTGCAACGGATACAAGAGAATCCTGACATGTATAATATTACTTACATTGGCTTTCACACATGCAAAGACACCCTCAACCTCAATGCTCCACAATTGGTCACATATTCTGAAACTCGAGACTCATTTCTCGAGAATTCTCATCCTCATTCAAACATTGTGTCAAATGAACAACAACATGATCCTCCTATGGGATCACAAAGCACAACAAATGTAAAACAAGAATATCCCAACGAGGACACTCCCAGTGATCTTACAGATGCTAACCTGTGGTCTGATTTGAAGGATTTTGAACTATCCAATGCCTTGAAAATAGCATCTGATAATGCAGATATTGGGTATTCATGTACTGCCTCTCGGAGTCTGGACATGGATTTTGGGATGTTTTGTTCTCATTTCAGCTCCGATTTCAACTTTGATGAAAACCATTTTGTTTAG 945 0.4286 MMSILFPPTSSAKGKRLIRELVQGQDYATQLKFLLQNPIGPRGFLSAKELVSNVLRSFSQTLSVLTSSDDDDHVSQNLGEDASQLVASSINPRSEDSTESRKGSLPLAKDRRGSYKRRRTEQTWTIVSQTNDDNHAWRKYGQKEILNSQFPRSYFRCTRKYEQGCRATKQVQRIQENPDMYNITYIGFHTCKDTLNLNAPQLVTYSETRDSFLENSHPHSNIVSNEQQHDPPMGSQSTTNVKQEYPNEDTPSDLTDANLWSDLKDFELSNALKIASDNADIGYSCTASRSLDMDFGMFCSHFSSDFNFDENHFV 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00054 314 SUPERFAMILY WRKY DNA-binding domain 128 192 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g00054 314 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 10 300 IPR044810 GO:0003700
Cca03g00054 314 MobiDBLite consensus disorder prediction 95 119 - -
Cca03g00054 314 MobiDBLite consensus disorder prediction 87 119 - -
Cca03g00054 314 PANTHER WRKY DNA-BINDING TRANSCRIPTION FACTOR 70 10 300 - -
Cca03g00054 314 SMART WRKY_cls 131 193 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00054 314 MobiDBLite consensus disorder prediction 214 252 - -
Cca03g00054 314 ProSiteProfiles WRKY domain profile. 126 189 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00054 314 Pfam WRKY DNA -binding domain 132 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g00054 314 Gene3D WRKY domain 116 186 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00054 Cca-Chr3 797468 799850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00054 9 232 WRKY Transcription Factor Family AT3G56400 40.000 1.49e-47 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g00054 WRKY 2.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00054 - - gmx:100170683 423.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01180 05 29372764 29377627 Cca03g00054 03 797468 799850 PCT