Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00053 ATGGAGAAGGACTTGGTCGAATTGTACCAGGCCGCCAAGAAGgcggcggacgccgcgctctccgccgacgccgacgccgacgAGGGCAGATGCATCGACGCGCTCGACCAGCTCAAGAAATTTCCCGTCAATTATAAGATTCTCGTCAACACACAGGTGGGCAAACATCTGAAAGTTCTCACAAAGCACCCAAGGCAGAATATCCGGGCCTTTGCTATTGACCTAATTGAGATATGGAAAGGTGTAATTATCAAAGAAACAAGCAAAAACAAAAATGGGGGCTCTGATAGTAAGGTTGAGTCGACTAATGGGGAGAGGGCTAAAGCTGGGAAAATGCAAAAGAGTCCTTCAATTAAGGTTGAAAAAGGTGAACCTGTCAAGGTTGAGAAAATTGATAGGAATGGTACACCAAAGTCAAGCTCAGAAAATATAAAGAAGATGCAAAATGATGTCAAGAATGAGAAAATTGATTGTGCTGCAAATGTCAAGGTGGAAAAGATATCCAAGGATGAAAAGCCTGTTTCTGGAGCAAAGAAAATGTCATCCAGTTCTGCCGCTCCTCCAAAGCTGAAGACTATGATTAAATCTAATGATGCAACGCGAGACAAAATAAGGGAACTTCTCCATGAAGCTTTATCCAAGGTCTCTGGAGAGGCTGATGAAGATCTTGCAGATGTTGTCAATTCTGCTGATGCTATTCGTGTTGCTGTGACAGTGGAGTCTGTATTGTTTGAAAAGTGGGGTCCTTCAAATGGGGCACATAAGGTCAAGTATAGGTCCTTAATGTTTAACCTAAAGGATTCAAATAACCCTGATTTCCGGAGAAAGGTTCTGCTTGGTGTAGTTGAGCCAGAGCAGCTAATCAACATGAGTACAGCAGAAATGGCTAGTGAGCAAAGGAAGCAGGAGAATCAGAAAATCACAGAGAAAGCTTTGTTTGAATGTGAGCGTGGAGCTCAACCAAAAGCTACAaccgatcaatttaagtgtggccgatgtggtcaaagaaagtgcacctattaccaaatgcagactcgcagtgctgatgaacctatgacaacctatgtcacttgttgtgtctgcaataaccgttggaagttctgTTAG 1107 0.3568 MEKDLVELYQAAKKAADAALSADADADEGRCIDALDQLKKFPVNYKILVNTQVGKHLKVLTKHPRQNIRAFAIDLIEIWKGVIIKETSKNKNGGSDSKVESTNGERAKAGKMQKSPSIKVEKGEPVKVEKIDRNGTPKSSSENIKKMQNDVKNEKIDCAANVKVEKISKDEKPVSGAKKMSSSSAAPPKLKTMIKSNDATRDKIRELLHEALSKVSGEADEDLADVVNSADAIRVAVTVESVLFEKWGPSNGAHKVKYRSLMFNLKDSNNPDFRRKVLLGVVEPEQLINMSTAEMASEQRKQENQKITEKALFECERGAQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCCVCNNRWKFC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00053 368 SUPERFAMILY Elongation factor TFIIS domain 2 187 298 IPR036575 GO:0006351
Cca03g00053 368 Pfam TFIIS helical bundle-like domain 34 81 IPR017923 -
Cca03g00053 368 MobiDBLite consensus disorder prediction 89 121 - -
Cca03g00053 368 CDD TFIIS_I 30 83 - -
Cca03g00053 368 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 24 98 IPR035441 -
Cca03g00053 368 MobiDBLite consensus disorder prediction 170 189 - -
Cca03g00053 368 TIGRFAM TFSII: transcription elongation factor S-II 12 368 IPR006289 GO:0003676|GO:0005634|GO:0006368
Cca03g00053 368 SUPERFAMILY Zinc beta-ribbon 307 366 - -
Cca03g00053 368 CDD Zn-ribbon_TFIIS 321 367 - -
Cca03g00053 368 Gene3D - 176 296 IPR036575 GO:0006351
Cca03g00053 368 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Cca03g00053 368 PIRSF TFIIS 2 368 IPR035100 -
Cca03g00053 368 Gene3D - 297 368 - -
Cca03g00053 368 ProSiteProfiles Zinc finger TFIIS-type profile. 326 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cca03g00053 368 ProSiteProfiles TFIIS central domain profile. 200 323 IPR003618 GO:0006351
Cca03g00053 368 ProSiteProfiles TFIIS N-terminal domain profile. 7 86 IPR017923 -
Cca03g00053 368 SMART Cys4_2 328 367 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cca03g00053 368 Pfam Transcription factor S-II (TFIIS), central domain 197 314 IPR003618 GO:0006351
Cca03g00053 368 PANTHER TRANSCRIPTION ELONGATION FACTOR TFIIS 1 368 - -
Cca03g00053 368 MobiDBLite consensus disorder prediction 131 150 - -
Cca03g00053 368 SMART mid_6 198 306 IPR003618 GO:0006351
Cca03g00053 368 Pfam Transcription factor S-II (TFIIS) 328 366 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cca03g00053 368 ProSitePatterns Zinc finger TFIIS-type signature. 330 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Cca03g00053 368 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 368 - -
Cca03g00053 368 SMART TFS2_5 8 85 IPR003617 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00053 Cca-Chr3 777608 781484 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Cca03g00053 TFIIS_M 3.8e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00053 K03145 - gmx:100811982 632.484