Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00051 ATGAGAGGAGGAAGGAAGAATTTGAAGAGGGCAACAGAGGAAAAACATATAACTCTTCAAGATGGGCAAAGCATCATGCAGGTGTTGTCTCTTCGAGGCTCTAATCTCATTGAGGTGATGGATGCATCTGGCAACAAATCACTGGCTCTATTCCCTGCTAAATTTCAGAGAAGCATGTGGATTAAACGAGGAAGCTTTGTTGTTGTTGATGAAAGTGGAAAGGAAAAGGCTCTTGAATCAGGCAGCAAGGTTGCCTGTATTGTTTCTCAAGTTCTTTTCTATGAACAAGTTCGAGAACTACAGAAATCACCAGAATGGCCTGAAAAATTCAAATCTGAGACGTTAGATGATTCAAATTCAAATGAAAGAACTGCTTCCCAACAAGAGAATGAGCGTGAGGATGAGATGGAGGGGAGTGATGATGATGGACTACCCCCATTGGAAGCCAATACAAACAGGATGAGACCTTTTGAGTTGGAAGCTGACGAAGATTCAGAATCCAGCTCAGATACAGATGATTGA 522 0.4195 MRGGRKNLKRATEEKHITLQDGQSIMQVLSLRGSNLIEVMDASGNKSLALFPAKFQRSMWIKRGSFVVVDESGKEKALESGSKVACIVSQVLFYEQVRELQKSPEWPEKFKSETLDDSNSNERTASQQENEREDEMEGSDDDGLPPLEANTNRMRPFELEADEDSESSSDTDD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00051 173 SMART eIF1neu4 18 107 IPR001253 GO:0003743|GO:0006413
Cca03g00051 173 ProSiteProfiles S1 domain IF1 type profile. 8 84 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cca03g00051 173 Gene3D - 1 143 IPR012340 -
Cca03g00051 173 SUPERFAMILY Nucleic acid-binding proteins 3 136 IPR012340 -
Cca03g00051 173 MobiDBLite consensus disorder prediction 100 173 - -
Cca03g00051 173 MobiDBLite consensus disorder prediction 101 118 - -
Cca03g00051 173 Pfam Translation initiation factor 1A / IF-1 22 74 IPR006196 GO:0003723|GO:0003743|GO:0006413
Cca03g00051 173 PANTHER TRANSLATION INITIATION FACTOR-RELATED 1 169 IPR039294 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00051 4 69 Eukaryotic Initiation Factors Gene Family AT2G04520 37.500 8.57e-06 42.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00051 K15025 - gmx:100306612 250.366