Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00047 ATGAAGTTACAGTTCTCTACTGTTGTACTTATTCTATTAGGCTCCACACTCTCTCTATGTGGCCTGATTGTAGCTGACTTGAGTTCTGACCAACAAGCTCTATTGGAGTTTGCTTCTAGTGTTCCACATGCACCAAGGCTCAACTGGAAGAATAACTCTGCTTCAATTTGCACCTCATGGGTTGGTGTGACTTGCAACTCAAATGGAACACGTGTCATAGGCCTCCACCTTCCAGGAATAGGATTATCAGGGTCCATTCCAGAGAACAGCATAGGAAAACTAGATGCTCTTAGGGTCCTGAGTCTTCATTCCAACGGCCTTCGAGGAAATCTTCCTTCTAACATCCTCTCCATTCCTTCACTCCAATTTGCATACCTTCAGCACAACACCTTCTCTGGCCTAATTCCTTCTCCTGTGTCCCCTAAACTCACCGCATTAGATATTTCCTTCAACTCCTTTACTGGCAGCATCCCTCCAGCCTTTCAGAACCTTAGAAGACTCACTTGGTTGTATCTCCAAAACAATTCCATATCAGGAGCTATTCCTGACTTCAACCTTCCAAGTCTCAAGTATTTGAACTTGAGCAACAATAACTTGAATGGCTCAATTCCAAATTCCATAAAAACATTCCCTTATACTTCTTTTGTTGGAAACTCTCTCTTGTGTGGAGCACCTCTCAACCATTGCTCTACAATCTCCCCTTCTCCTTCTCCTTCTCCTTCCACTGATTACGAGCCACTCACTCCACCAACGGCACAAAACCAAAAAGCTCCCAACCATAAGAACAACTTTGGCCTAGCTACTATACTTGCTCTAGTTATTGGGGTCATTGCCTTCTTCTCTCTACTAGTTGTGGTGATTTGTGTGTGCTGTTTGAGGAGGAAGAAAAACAGTGAAAGCAGTGGCATACTGAAAGGAAAGGCTTCTTGTGCTGGTAAGGCTGAGATTTCAAAGAGTTTTGGAAGTGGTGTGCAAGGGGCTGAAAAGAACAAGCTGTTTTTCTTTGAGGGTTCCTCTCATAGCTTTGACCTTGAGGATTTGCTGAAGGCTTCAGCTGAAGTTCTTGGAAAAGGAAGCTATGGAACTGCATACAAGGCTGTTTTGGAGGAGGGAACAACAGTGGTAGTTAAAAGGTTGAAGGAAGTTGTGGTAGGAAAGAAGGAGTTTGAGCAACAGTTGGAGATTGTGGGGAGAATTGGAAGCCACCCCAATGTGATGTCCCTAAGAGCTTATTATTATTCCAAAGATGAGAAACTTCTGGTTTACAACTACATGCAAGGTGGCAGCTTGTTTTTCTTGTTGCATGGAAGCAGGGGTGCAGGAAGAACCCCCTTAGACTGGGATTCAAGAGTGAAGATTTTGCTTGGAGCTGCCAAGGGAATTGCTTTCATCCACTCAGAGGGGGGTCCAAAGTTCACACATGGCAACATAAAGTCAACCAATGTGCTCATAACCCAAGAACTTGACAGCTGCATATCCGATGTGGGACTTCCACCTCTCATGAGCACCCCGGCAACCATGTCAAGAGCCAATGGGTACAGAGCTCCAGAAGCCACTGACTCAAGGAAGATCACTCACAAGAGTGATGTCTACAGCTTTGGTGTGCTGCTGCTGGAAATGCTGACAGGGAAGACACCACTTAGGTATCCAGGGTTTGAGGATGTGGTTGATCTTCCAAGGTGGGTGAGGTCCGTTGTTAGAGAGGAATGGACTGCTGAAGTGTTTGATGAGGAGCTTCTGAGAGGGCAATATGTTGAAGAGGAAATGGTGCAGATGCTTCAGATTGCATTGGCTTGTGTGGCTAAGGGGCCAGATAATAGGCCTAGAATGGATGAAGTTGTTAGAATGATTGAGGAGATTAAGCACCCTGAGTTGAAGAACAGGCCATCCTCTGAGTCTGAGTCTAATGTGAACACTCCATGA 1923 0.4524 MKLQFSTVVLILLGSTLSLCGLIVADLSSDQQALLEFASSVPHAPRLNWKNNSASICTSWVGVTCNSNGTRVIGLHLPGIGLSGSIPENSIGKLDALRVLSLHSNGLRGNLPSNILSIPSLQFAYLQHNTFSGLIPSPVSPKLTALDISFNSFTGSIPPAFQNLRRLTWLYLQNNSISGAIPDFNLPSLKYLNLSNNNLNGSIPNSIKTFPYTSFVGNSLLCGAPLNHCSTISPSPSPSPSTDYEPLTPPTAQNQKAPNHKNNFGLATILALVIGVIAFFSLLVVVICVCCLRRKKNSESSGILKGKASCAGKAEISKSFGSGVQGAEKNKLFFFEGSSHSFDLEDLLKASAEVLGKGSYGTAYKAVLEEGTTVVVKRLKEVVVGKKEFEQQLEIVGRIGSHPNVMSLRAYYYSKDEKLLVYNYMQGGSLFFLLHGSRGAGRTPLDWDSRVKILLGAAKGIAFIHSEGGPKFTHGNIKSTNVLITQELDSCISDVGLPPLMSTPATMSRANGYRAPEATDSRKITHKSDVYSFGVLLLEMLTGKTPLRYPGFEDVVDLPRWVRSVVREEWTAEVFDEELLRGQYVEEEMVQMLQIALACVAKGPDNRPRMDEVVRMIEEIKHPELKNRPSSESESNVNTP 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00047 640 Pfam Leucine rich repeat 141 199 IPR001611 GO:0005515
Cca03g00047 640 Gene3D Ribonuclease Inhibitor 87 234 IPR032675 -
Cca03g00047 640 Gene3D Ribonuclease Inhibitor 23 86 IPR032675 -
Cca03g00047 640 Gene3D Phosphorylase Kinase; domain 1 315 424 - -
Cca03g00047 640 Gene3D Transferase(Phosphotransferase) domain 1 425 638 - -
Cca03g00047 640 MobiDBLite consensus disorder prediction 233 258 - -
Cca03g00047 640 CDD STKc_IRAK 355 620 - -
Cca03g00047 640 ProSiteProfiles Leucine-rich repeat profile. 188 210 IPR001611 GO:0005515
Cca03g00047 640 Pfam Leucine rich repeat N-terminal domain 28 66 IPR013210 -
Cca03g00047 640 PANTHER OS05G0588300 PROTEIN 4 638 - -
Cca03g00047 640 SUPERFAMILY L domain-like 32 227 - -
Cca03g00047 640 SUPERFAMILY Protein kinase-like (PK-like) 353 620 IPR011009 -
Cca03g00047 640 Pfam Protein kinase domain 353 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00047 640 MobiDBLite consensus disorder prediction 621 640 - -
Cca03g00047 640 PANTHER RECEPTOR-LIKE KINASE 4 638 - -
Cca03g00047 640 ProSitePatterns Protein kinases ATP-binding region signature. 355 386 IPR017441 GO:0005524
Cca03g00047 640 ProSiteProfiles Protein kinase domain profile. 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00047 Cca-Chr3 716709 721730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00047 5 635 Receptor kinase-like Gene Family AT5G58300 60.759 0.0 744
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Cca03g00047 Pkinase 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00047 - - gmx:100818444 1117.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01191 05 29479463 29484028 Cca03g00047 03 716709 721730 PCT