Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00045 ATGGGGAGGAgacctgcaaggtgttatcggcagataaagaacaagccatatcccaaatcacgtttctgccgtggtgttcctgatcctaagatcagaatttatgatgttggtatgaagaagaaaggtgttgatgagtttcctttctgtgttcatctggttagctgggaaaaggaaaatgtttcgagtgaagcattggaagctgcTAGAATTGCATGCAACAAGTATATGGCGAAATTTGCTGGAAAGGATGCTTTCCACTTGAGAGTCAGAGTACATCCATTCCATGTTCTTAGGATCAACAAAATGCTTTCGTGTGCTGGAGCTGATAGGCTTCAGACCGGAATGAGAGGTGCATTTGGAAAGCCACAGGGTACATGTGCTAGAGTGGCCATTGGTCAGGTCCTTCTTTCTGTCCGCTGTAAGGACAGCAACAGTCATCATGCACAGGAGGCCCTTCGACGTGCTAAGTTTAAGTTCCCTGGTCGTCAAAAGATCATAGTTAGCAGGAAATGGGGTTTCACCAAGTTTAGCCGTGCTGATTATCTCAAGTTCAAGTCAGAGGGCAGGGTTGTGCCTGATGGTGTTAATGCAAAGCTTCTTGGGTGTCATGGACCACTGGCAAACCGTCATCCTGGACAAGCTTTTTTGACTACTGCTTAG 660 0.3333 MGRRPARCYRQIKNKPYPKSRFCRGVPDPKIRIYDVGMKKKGVDEFPFCVHLVSWEKENVSSEALEAARIACNKYMAKFAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLKFKSEGRVVPDGVNAKLLGCHGPLANRHPGQAFLTTA 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00045 219 PANTHER 60S RIBOSOMAL PROTEIN L10-LIKE 1 217 - -
Cca03g00045 219 Gene3D Ribosomal protein L10e/L16 1 217 IPR036920 GO:0003735|GO:0005840|GO:0006412
Cca03g00045 219 Pfam Ribosomal protein L16p/L10e 12 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca03g00045 219 ProSitePatterns Ribosomal protein L10e signature. 108 129 IPR018255 GO:0003735|GO:0005840|GO:0006412
Cca03g00045 219 CDD Ribosomal_L16_L10e 41 166 IPR016180 GO:0003735|GO:0005840|GO:0006412
Cca03g00045 219 SUPERFAMILY Ribosomal protein L16p/L10e 4 173 IPR036920 GO:0003735|GO:0005840|GO:0006412
Cca03g00045 219 PIRSF RPL10a_RPL10e 1 182 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca03g00045 219 TIGRFAM uL16_euk_arch: ribosomal protein uL16 1 174 IPR001197 GO:0003735|GO:0005840|GO:0006412
Cca03g00045 219 PANTHER 60S RIBOSOMAL PROTEIN L10 1 217 IPR001197 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00045 Cca-Chr3 705853 708425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00045 1 219 Cytoplasmic Ribosomal Protein Gene Family AT1G66580 86.301 1.92e-143 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00045 K02866 - gmx:100815571 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g01192 05 29487830 29489592 Cca03g00045 03 705853 708425 PCT