Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00043 ATGGAAtcgtcgccgtcttcttcttcctcgtcgtcatcttcCGGGAGCGAGACCGGCGGTGGCGCTGTCACGTGGTTCGGGATGAGTTTCCCGTTCCGTTCTCCGCTCTCTCTCGTCATGGATTACTGCGCGCGCGAGGATTCCGCGGAGCCTGTGATCATCATTCCCCGCACGCGCCCTCGGTTTCAGGCTCAGCCTGAAtcggcttcggcttcggcttcggcttcggcttctgcgtccgcttcggcCTCTGATTCCGACGAGAATGCCTGCAGCGGCGCGGAGGAGGTTGCGATACGCATAATTGGGGCCGGCGAGCAGGAGAGCGGCTCGCCGTCGTCGTCGCGGGGCCGGGAGGCAGGCTGCGAGGAGGAAGTGATCGGGAGGAGCGCGATGCTGTCGTCCGAGGCTCGCCGGAGAATGGCGGAGGAGAGGGTTCCGTTGGTTTCGTTGGATGATGGGATTGGTGGCGGCAGGGATTCTTCTTCTTCATCATCATCGTCGTCTACCTACCAGAGGTATGATATTCAGCAGGTCGCCAAGTGGATTGAGCAGATTCTTCCGTTTTCGCTCTTGTTGTTGATAGTTTTCATCCGCCAGCATTTGCAAGGTTTCTTCGTCACAATTTGTATATCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCCCTGAAGGGAGATCGGAAAGTATCTATTCTGATTGGCATCTCTTTTGCCTTTATGCTGCATGTGATATGCATTTACTGGTGGTATCGAAATGATGATCTTTTATACCCTTTGGCTATGCTTCCACCAAAATCAACACCACCTTTCTGGCATACAATATTCATCATTTTGGTTAATGATACATTGGTGCGGCAAGCAGCGATGGCTTCCAAGTGTGTGTTGCTTATTTACTACAAAAATGGAAGAGGCCATAACTTCCGTCGGCAGGGTCAAATGTTAACTCTGGTTGAGTACACTCTGCTGTTGTATCGTGCCTTGTTGCCAACACCTGTTTGGTACCGATTTTTCTTGAACAAGGAGTACGGAAGTCTCTTTTCCTCACTGACCACAGGATTGTATCTAACTTTCAAGCTAACATCAGTAGTTGAGAAGGTCCAATGCTTCGTTTCTGCCTTAAAAGCGTTATCGAAAAAGGAAGTTCATTATGGGGTTTATGCCACAACGGAACAGGTGAATGCAGCTGGTGACATGTGTGCTATATGCCAGGAGAAGATGCAGGCTCCCATATTGTTGAGCTGTAAACACATGTTCTGTGAGGAGTGTGTATCGGAATGGTTTGAGAGAGAACGAACTTGCCCATTATGCAGGGCATTGGTAAAACCAGCTGATCTGCGGACCTTTGGAGATGGATCAACAAGTCTGTTTTTTCAGTTATTTTAA 1398 0.4621 MESSPSSSSSSSSSGSETGGGAVTWFGMSFPFRSPLSLVMDYCAREDSAEPVIIIPRTRPRFQAQPESASASASASASASASASDSDENACSGAEEVAIRIIGAGEQESGSPSSSRGREAGCEEEVIGRSAMLSSEARRRMAEERVPLVSLDDGIGGGRDSSSSSSSSSTYQRYDIQQVAKWIEQILPFSLLLLIVFIRQHLQGFFVTICISAVMFKSNEIVKKQTALKGDRKVSILIGISFAFMLHVICIYWWYRNDDLLYPLAMLPPKSTPPFWHTIFIILVNDTLVRQAAMASKCVLLIYYKNGRGHNFRRQGQMLTLVEYTLLLYRALLPTPVWYRFFLNKEYGSLFSSLTTGLYLTFKLTSVVEKVQCFVSALKALSKKEVHYGVYATTEQVNAAGDMCAICQEKMQAPILLSCKHMFCEECVSEWFERERTCPLCRALVKPADLRTFGDGSTSLFFQLF 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00043 465 MobiDBLite consensus disorder prediction 1 20 - -
Cca03g00043 465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 379 452 IPR013083 -
Cca03g00043 465 ProSiteProfiles Zinc finger RING-type profile. 404 442 IPR001841 -
Cca03g00043 465 Pfam Zinc finger, C3HC4 type (RING finger) 402 445 - -
Cca03g00043 465 MobiDBLite consensus disorder prediction 63 89 - -
Cca03g00043 465 SMART ring_2 404 441 IPR001841 -
Cca03g00043 465 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 4 465 IPR044235 GO:0061630|GO:1904294
Cca03g00043 465 ProSitePatterns Zinc finger RING-type signature. 419 428 IPR017907 -
Cca03g00043 465 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 4 465 - -
Cca03g00043 465 SUPERFAMILY RING/U-box 395 447 - -
Cca03g00043 465 MobiDBLite consensus disorder prediction 104 124 - -
Cca03g00043 465 CDD RING-HC_RNFT1_like 403 442 - -
Cca03g00043 465 MobiDBLite consensus disorder prediction 54 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00043 Cca-Chr3 684045 697018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00043 73 465 C3H Transcription Factor Family AT5G01960 68.262 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00043 - K22379 gmx:100784614 758.059