Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00040 ATGGAGGCACTGGTGTGCAGAAAACTGGGCGATCCAACGCTGGGTTTGGAAGACAACAATAGCCCAATAATTTTGTCAAGGAATCACCCAATTCCCCAACTCGATTCTCCCACTGCTGTAAGAGTCAGAATCAAAGCCACAAGCTTGAACTTCGCCAATTACTTGCAGATATTGGGAAAGTACCAAGAGAAATACCCTTTGCCATTCATCCCCGGCTCCGACTTTTCCGGCGTCGTCGACGCCGTTGGCCCCAAAGTTTCTGACTTTCGAGTCGGCGACCCCGTTTGCTCCTTCGCCGGCCTCGGTACCTTCGCTGAGTTCATCGTCGTTGATCAGTCCCATTTGTTTCGAGTGCCCCAAGGTTGTGATCTGGTTTCTGCTGGGGCACTTGCTGTGGCGTTTGGCACTTCTCACGTGGGGCTTGTACACAGGGCACAGTTGACATCAGGTCAGGTGTTGCTGGTTTTGGGTGCTGCTGGAGGTGTGGGCCTTGCTGCTGTGCAAATTGGAAAAGCTTGTGGGGCCATTGTCATTGCTGTTGCAAGGGGAGATGAAAAGGTGCAGCTCTTGAAATCTCTTGGTGTTGATCATGTGGTGGATCTGGGCAATGAAAATGTAACTCAGAGTGTCAAAGAGTTCCTTCAGGCCAGAAAGCTTAAGGGGATTGATGTCCTGTATGACCCGGTTGGAGGCAAGCTCACTAAAGAATCTCTGCGGCTTCTGAAGTGGGGAACGAAGATTCTCATAATTGGGTTTGCGAGTGGAGAAATTCCTGTCATCCCTGCTAACATTGCTCTTGTTAAGAATTGGACTGTGCATGGCCTTTATTGGGGTAGCTATAAAATACACTGCCCAGGTGTTCTCGAAGATTCTATCAAGGAGCTACTTTCTTTGTTGGCAAGAGGATTGATTTCTATCTATATTTCTCATTCTTATCGCCTGTCAGAGGCCAACCTTGCCTTTTCTGCCATCAAAGATAGGAAAGTTATTGGAAAGGTGATGATTGTTTTTGATGAGAAACTTCCAAGATCTAAGCTGTGA 1041 0.4793 MEALVCRKLGDPTLGLEDNNSPIILSRNHPIPQLDSPTAVRVRIKATSLNFANYLQILGKYQEKYPLPFIPGSDFSGVVDAVGPKVSDFRVGDPVCSFAGLGTFAEFIVVDQSHLFRVPQGCDLVSAGALAVAFGTSHVGLVHRAQLTSGQVLLVLGAAGGVGLAAVQIGKACGAIVIAVARGDEKVQLLKSLGVDHVVDLGNENVTQSVKEFLQARKLKGIDVLYDPVGGKLTKESLRLLKWGTKILIIGFASGEIPVIPANIALVKNWTVHGLYWGSYKIHCPGVLEDSIKELLSLLARGLISIYISHSYRLSEANLAFSAIKDRKVIGKVMIVFDEKLPRSKL 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00040 346 Pfam Zinc-binding dehydrogenase 161 298 IPR013149 -
Cca03g00040 346 PANTHER SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1 336 - -
Cca03g00040 346 Gene3D - 35 331 - -
Cca03g00040 346 PANTHER QUINONE OXIDOREDUCTASE-LIKE PROTEIN 2 1 336 - -
Cca03g00040 346 CDD QOR1 1 335 - -
Cca03g00040 346 Pfam Alcohol dehydrogenase GroES-like domain 38 97 IPR013154 -
Cca03g00040 346 SMART PKS_ER_names_mod 23 335 IPR020843 GO:0016491
Cca03g00040 346 Gene3D - 133 280 - -
Cca03g00040 346 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 122 283 IPR036291 -
Cca03g00040 346 SUPERFAMILY GroES-like 24 154 IPR011032 -
Cca03g00040 346 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 150 171 IPR002364 GO:0008270|GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00040 Cca-Chr3 648961 653255 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00040 64 266 Monolignol Biosynthesis Gene Families AT1G72680 27.083 2.69e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00040 K00344 - gmx:100817700 602.823