Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00034 ATGGAGACTCTGAAAGCTGCGATTCCAGAATCCCTGAAGCGAGCGATAGGAGATAGCACTGTTTACGATCTTCGCAGCACGTGTTCCTCTCTTCACAGCTTCTTTCTTCACTTCGATCCATTTCAGCAGATGATCACTGAACTGGCGGATCCCAAGTATGCTCTGTGCGGCAAGAGTAAGGACGATGCTTCCAAATCCAAGCAGCTTGGCAATCAATGCTTCTCCAATGCAGATTATGCGAAGGCCTTGGAGTGCTATACTCAGGCATTGCGCAAGGCTCCATTAGACACTGGTGACATGGAAAGTAATCTTGTTGCAACATTATATGTCAATCGTGCTACTGTATTACATAAAATGAATCTTTCAGTAGAATGTTTGCGAGATTGCACTCGAGCTCTTCAGATTTGTCCAAGCTATGCAAAGGCATGGTACAGGAGAGGGAAGGCAAATGCTTCATTGGGAAATTATAAAAGTGCAATCTGCGACCTAAATGTGGCCAAGAGTGTGGAACCTTCAATGAGTGGGAAGAGAAAAATAGAATGTGAACTGAAAATTCTTTTAGATCAATGCAAGAGTACAAGTGCGGTAGTACAGGATAAGAAGTACAACTGCAATGCTGTGGGTGAGATGCCCCAGATAAAATTACAGTGTGTTCCCATGCAAGATAAAGGAAGAAGCATGGTGTCATCATGTGTCATTTCACCAGGTTCTTTGGTTCATGCTGAAGAACCTTATGCTATGATAATACTAAAGCAATGTCGTGAAACTCATTGCCATTATTGCTTGAATGACCTACCTGCTGACAGAGTTCCTTGTATATCATGTTCAATACCATTATATTGCTCCCACCAATGCCAGATACGGGCAGGTGGGAAAATGTTCAGGATTCACCCAGAAAATAATGGTATTTTTAAAAACTTACCCACCGATCTTGGAGAATATGTTGCTGAAGTTATTCAATGCAATGATTCTGAAGAAGAAATTGAGGATATTAGTGAACATAAACATGAATGTCAAGGTGTAAATTGGCCTGTGGTACTGCCGTCTGAGATAGTTTTGGCTGGCCGAATACTAGCAAGATTTTTGCCAAAGTGCACATCTGAAGATATTGTAAACTTTGTGAAAAGGCTGGAGCTTTCTCATTGTTACAAACATATGCCAGCTGAAAGCAAATTGGATTCACATATATTTGCCATTGTGTTATTAAATTGTCTTCAACACTCTTGTGGAACTATGTTTTCCATAGACGGAGTCTCCATATCACAGGTTGTCGAAATTATTTCTCAAATTAAAGTGAATTGTATGACTGTTGTTCGTTTAAAATCAATAGACACTCATGGACTATCTGGTCATTTTGGAGAATTTCCATTTCAGTCCAACACGCATTTAACTAGTACTGTAGAACAGGTCAGAGTGGGTAAAGCTATTTATAAAGCTGGCAGTTTATTCAACCATTCCTGCCAACCAAATATTCATGCATATTTTCTTTCTCGCACTCTTTATATACGAACCACAGAAGTTGTAGCAGCTGGGTGTCAGCTAGAATTGTCTTATGGTCCACAGGTTGGGTTGTGGGATTGTAAAGATCGTCTTAATTTTCTTGAAGATGAGTACGGGTTTCTTTGTCAGTGTACTGGTTGTTCCGAAGTTAATCTATCTGACGTTGTGTTCAATGCCTTCCATTGTGTCAATCCAAATTGTTCTGGTGCAGTGTTGGAAAGCAGAGCACTTGACTGTGAAAAGCATAAAATCAAGCACTTCCCTGTTACTGACAATGTTGACAAGAATGATGACATTTATGAAGTAGGTCTTCATGTCTTCAAACAAAATGGTGCCTCTGTTCATATTCGACCTGGATACTGTTTGAAATGTGGTTCTTACTGTGATTTGGAGGCTTCACATGCTGCAGTTGATAAAGCTTTAGTATGCATGAAAAGGTTGCAGGATGCAATATTGTTAAAAGAAATTTCAAGTATTGCTATTTCTGATGCTTTGAGATCTCTTCATCTGCTGAGATTAAATTTGCATGCATACAACAAGCTTATTGCAGAGGCAGAAGACAACATTGCCCAAGCTTTATGTTTTGCAGGAGAATTACAATTATCTATGGAGCACTGTAAAGCATCTGTCCAGATTCTGAAGAAGCTATATGATACTGATGATATTGTTATTGCTTATGAACTTGTGAAGCTTTCTTCTATCCAACTTTCCTTGGATGATGATACTGCTGTGGACAGCATAAATCAAATAGATGATATCTTCTCACGATATTATGGACTTCATGCAGACTTGGTCTTCCCTTATCTTCAATACCTTAGAGGAGAGAAATTGAACAATTTTCACTGA 2346 0.3939 METLKAAIPESLKRAIGDSTVYDLRSTCSSLHSFFLHFDPFQQMITELADPKYALCGKSKDDASKSKQLGNQCFSNADYAKALECYTQALRKAPLDTGDMESNLVATLYVNRATVLHKMNLSVECLRDCTRALQICPSYAKAWYRRGKANASLGNYKSAICDLNVAKSVEPSMSGKRKIECELKILLDQCKSTSAVVQDKKYNCNAVGEMPQIKLQCVPMQDKGRSMVSSCVISPGSLVHAEEPYAMIILKQCRETHCHYCLNDLPADRVPCISCSIPLYCSHQCQIRAGGKMFRIHPENNGIFKNLPTDLGEYVAEVIQCNDSEEEIEDISEHKHECQGVNWPVVLPSEIVLAGRILARFLPKCTSEDIVNFVKRLELSHCYKHMPAESKLDSHIFAIVLLNCLQHSCGTMFSIDGVSISQVVEIISQIKVNCMTVVRLKSIDTHGLSGHFGEFPFQSNTHLTSTVEQVRVGKAIYKAGSLFNHSCQPNIHAYFLSRTLYIRTTEVVAAGCQLELSYGPQVGLWDCKDRLNFLEDEYGFLCQCTGCSEVNLSDVVFNAFHCVNPNCSGAVLESRALDCEKHKIKHFPVTDNVDKNDDIYEVGLHVFKQNGASVHIRPGYCLKCGSYCDLEASHAAVDKALVCMKRLQDAILLKEISSIAISDALRSLHLLRLNLHAYNKLIAEAEDNIAQALCFAGELQLSMEHCKASVQILKKLYDTDDIVIAYELVKLSSIQLSLDDDTAVDSINQIDDIFSRYYGLHADLVFPYLQYLRGEKLNNFH 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00034 781 Pfam SET domain 467 519 IPR001214 GO:0005515
Cca03g00034 781 ProSiteProfiles TPR repeat profile. 63 96 IPR019734 GO:0005515
Cca03g00034 781 Gene3D SET domain 401 518 IPR046341 -
Cca03g00034 781 ProSiteProfiles SET domain profile. 211 519 IPR001214 GO:0005515
Cca03g00034 781 Gene3D Tetratricopeptide repeat domain 38 197 IPR011990 GO:0005515
Cca03g00034 781 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 775 - -
Cca03g00034 781 Gene3D Tetratricopeptide repeat domain 524 772 IPR011990 GO:0005515
Cca03g00034 781 ProSiteProfiles TPR repeat profile. 140 173 IPR019734 GO:0005515
Cca03g00034 781 SMART tpr_5 140 173 IPR019734 GO:0005515
Cca03g00034 781 SMART tpr_5 106 139 IPR019734 GO:0005515
Cca03g00034 781 SMART tpr_5 63 96 IPR019734 GO:0005515
Cca03g00034 781 SMART tpr_5 683 716 IPR019734 GO:0005515
Cca03g00034 781 SUPERFAMILY TPR-like 63 719 IPR011990 GO:0005515
Cca03g00034 781 Coils Coil 668 688 - -
Cca03g00034 781 SUPERFAMILY SET domain 217 544 IPR046341 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca03g00034 SET 3.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00034 K24634 - gmx:100783548 1312.75