Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00032 ATGGCTCCCAAAAGACCCCAAAAGGTTGTGCAAATGGTAGAGACTTTAGGTGAAAAAGATGATGATGAACCGAAGAAGGACGAGGTTGTTAAAGTTTTGCCTTTCTTTAAACTCTTGAGCTATGCTGACGTGGCAGACTGGATTCTCATAGGTTTGGGAATTATAGGTTCTATCGTGCATGGCATGGCAATTCCTGTTGGCTATCTCTTGCTAGGAAAAGCTCTTAATGCTTTTGGGAACAACATCCACGACACTGATGCCATGGTTAAAGCTCTTGGAAAGgttATTCCATTCGTGTGGTATATGGCCATCGCCACATTTCCAGCTGGGGTGCTTGAGATTGGTTGTTGGATGTATACAAGTGAAAGACAGTTAATGAGGCTAAGATTAGCATATCTAAGGGCAGTCCTCAACCAAGAGATAGGAGCTTTTGATACAGAATTAACAAGTGGAAAAGTCATCAGTGGAATAAGCAAGCACATGAGTGTCATACAAGATGCCATTGGTGAGAAGTTGGGTCACTTCACCTCTAGCTGTGCAACTTTCTTTGCTGGAATTGTGATTGCCACCATATGCTCTTGGGAAGTGGCACTTCTCTGTTTAGTGGTTGTCCCGATTATTCTTATAATTGGGGCAACTTACACAAAGAAAATGAACAGCATTTCAACCACCAAAATGCTTTTCCATTCTGAAGCGACATCTATGATAGAGCAGACAATATCACATATAAAAACAGTTTATGCTTTTGTTGGAGAGAGTTCTGCAATCAAATCTTTTACAGAGAACATGGAAAAACAATACATTATAAGCAAAGGGGAGGCACTTGTGAAAGGAGTTGGGACAGGGATGTTTCAAACAGTGAGCTTCTGTTCTTGGGCTCTCATTGTATGGGTTGGAGCTGTTGTGGTCAGAGCCGGAAGAGCAACAGGAGGAGACATAATAGCTGCAGTGATGAGTATTCTCTTTGGTGCCATATCTCTCACTTATGCAGCACCAGACTTGCAAATATTCAATCAGGCAAAAGCTGCAGGGTATGAAGTTTTCCAAGTGATCCAAAGAAAGCCTCTAATAAGTAATGAATCAGAAGGGAAGATGCCTAGAAAAATTAAAGGTGACATTGACTTACGAGATGTTCACTTTTCCTACCCATCACGGCCAGAGAAACCAATCCTTCAAGGACTGTCCTTGACAATTCCAGCAGGAAAGACAGTAGCATTAGTTGGTAGCAGTGGCTGTGGAAAGAGCACTGTTATTTCACTGGTTAGCAGATTTTATGACCCCTCCAGAGGAGGAATTTTTATTGATCATCACAATATCAAGGATCTTGATCTGAAGTTCCTTCGAAGAAATATAGGGGCTGTTACCCAAGAACCATTGCTCTTTGCAGGCACCATCAAGGATAACTTGAAAGTGGGAAAAATGGATGCAGATGATCAAGAGATTCAGAAGGCAACAGTAATGTCAAATGCACCCTCTTTCATATCACAGCTGCCTAATCAGTACCTAACAGAGGTAGGAGAAAGGGGCGTCCAATTATCAGGAGGCCAAAAACAGAGAATTGCAATAGCAAGAGCTGTTCTTAAAAATCCTCCTATCCTTTTGCTTGATGAGGCCACTAGTGCCCTTGATTCAGAGTCTGAAAAGCTAGTTCAAGAAGCACTTGAGACAGCTATGCAGGGAAGGACTGTCATCTTGATTGCACACAGGCTGTCAACAGTTGTAAATGCAGATATAATTGTGGTGGTAGAGAATGGACAAGTTGCAGAGACAGGAACACACCAGAGTTTGTTAGACACAAGCAGATTCTATAGTACATTATTCAGCATGCAGAACATTGAACCAGTTCCTGAATCCAGAGCTACAATTTCCAAGAATAGAAGTGTCCGCCAAGAAGATTTTCCTGAAGAAACTAGACAACCACTAGTAGAGGTGCAGGTCCAAAGAAATATCACTGAGCATTCTGTGCTAAAGGAACAGAGCCAAATGAGCAGCAGAGGAAGAAATATATTTTTCAGAATTTGGTTTGGCTTAAAAAAGAGGGAGCTGGTGAAGATTGCTATTGGCTCATTTGCAGCAGCTTTCTCTGGCATCTCAAAGCCATTTTTTGGGTACTTCATCATCACCATTGGAGTAGCATACTTTGAAGAAGATGCAAAACGAAAAGTTGGACATTATTCAGCCATCTTTACAGCAATAGGGTTGCTTTCATTATTTAGCCACACCTTCCAACATTTCTTCTTTGGAGAGGTTGGAGAAAAGGCCATGGCAAATTTCAGACGTGTTCTGTATACAGGTGTGCTGCGTAATGAAGTAGGCTGGTTTGACAAATCAGAGAATACAGCTGGTTCATTGACTTCACGCATTATCAGTGACACTGCCATGGTCAAAGTTATCATTGCTGATCGAATGTCTGTAATTCTGCAATGTGTTTCCTCCATACTAATAGCAACAGTCGTCAGCATGAAAGTCAACTGGAGAATGAGTTTGGTAGCTTGGGCTGTGACGCCCTGCCACTTCATAGGTGGTCTCATTCAAGCCAAGTCTGCCAAAGGATTTTCAGGTGACCACTCTGCTGCACATTCTGAGCTTGTTGCTCTTGCATCTGAGTCCACAACCAACATAAAGACTATTGCATCGTTTTGTCATGAAGAACAAGTACTGAGGAAAGCCAAAACATCCCTGGAAATTCAAAAGAAAAATTATAGAAAAGAAAGCATCAAATATGGGATCATTCAAGGCTTCTCCCTTTGCTTGTGGAACATTGCACATGCTGTTGCTTTATGGTACACAAAAACTCTGATTGACAGACGTCAAGCCACCTTTGAAAATGGAATAAGATCATACCAAATTTTTTCTCTCACTGTTCCTTCTATCACAGAATTGTACACACTGATCCCAACTGTCATGTCTGCAATCTATACGCTAACTCCAGCTTTCAAAACCCTTGACCGTAAAACTGAAATTGAACCAGACACACCAGATGATTCCCAACCTGAGAGGATCCAAGGAAATATAGAATTTGAAAATGTAAAATTCAAATACCCTTCAAGACCGGCAGTCACTGTTCTTGACAATTTCAGTTTACAAATTGAAGCTGGATTGAAGGTGGCTTTTGTAGGACCAAGTGGAGCAGGAAAATCCTCTGTTTTGGCCCTTTTACTAAGATTTTATGATCCACAGGCAGGAAAGGTATTAATTGATGGCAAAGACATACAGAAATATAATCTAAGATGGTTAAGGACACAAATAGGACTGGTACAACAAGAGCCACTGCTTTTTAATTGCTCAATCAGAGACAATATTTGCTATGGGAATAATGGGGCTTCTGAAAGTGAAATAGTGGAGGTTGCTAAAGAAGCAAATATACATGAATTTGTAAGTAATCTACCAAATGGATATAATACTGTAGTTGGCGAGAAAGGTTGCCAGCTTTCTGGAGGACAAAAGCAAAGAATAGCCATTGCCAGAACCTTACTAAAGAAGCCTGCAATATTACTCCTTGATGAAGCAACAAGTGCTCTTGATGCTGAGTCTGAAAGAATTATAGTAAATGCTTTAAAAGCAATACATCTGAAGGAAGACAGTGGCTTGTGTTCAAGAACCACCCAGATCACGGTAGCTCATAGGCTTTCCACAGTAATAAACTCAGATACTATAATTGTCCTGGATAAAGGTAAAGTTGTAGAGATGGGCTCCCACACAACCCTAATAACAAAAGAAGCAGGAGTTTATTCAAGGTTATTCAGGTTACAGAGCTTTGAGGAAACTTCATAG 3774 0.4094 MAPKRPQKVVQMVETLGEKDDDEPKKDEVVKVLPFFKLLSYADVADWILIGLGIIGSIVHGMAIPVGYLLLGKALNAFGNNIHDTDAMVKALGKVIPFVWYMAIATFPAGVLEIGCWMYTSERQLMRLRLAYLRAVLNQEIGAFDTELTSGKVISGISKHMSVIQDAIGEKLGHFTSSCATFFAGIVIATICSWEVALLCLVVVPIILIIGATYTKKMNSISTTKMLFHSEATSMIEQTISHIKTVYAFVGESSAIKSFTENMEKQYIISKGEALVKGVGTGMFQTVSFCSWALIVWVGAVVVRAGRATGGDIIAAVMSILFGAISLTYAAPDLQIFNQAKAAGYEVFQVIQRKPLISNESEGKMPRKIKGDIDLRDVHFSYPSRPEKPILQGLSLTIPAGKTVALVGSSGCGKSTVISLVSRFYDPSRGGIFIDHHNIKDLDLKFLRRNIGAVTQEPLLFAGTIKDNLKVGKMDADDQEIQKATVMSNAPSFISQLPNQYLTEVGERGVQLSGGQKQRIAIARAVLKNPPILLLDEATSALDSESEKLVQEALETAMQGRTVILIAHRLSTVVNADIIVVVENGQVAETGTHQSLLDTSRFYSTLFSMQNIEPVPESRATISKNRSVRQEDFPEETRQPLVEVQVQRNITEHSVLKEQSQMSSRGRNIFFRIWFGLKKRELVKIAIGSFAAAFSGISKPFFGYFIITIGVAYFEEDAKRKVGHYSAIFTAIGLLSLFSHTFQHFFFGEVGEKAMANFRRVLYTGVLRNEVGWFDKSENTAGSLTSRIISDTAMVKVIIADRMSVILQCVSSILIATVVSMKVNWRMSLVAWAVTPCHFIGGLIQAKSAKGFSGDHSAAHSELVALASESTTNIKTIASFCHEEQVLRKAKTSLEIQKKNYRKESIKYGIIQGFSLCLWNIAHAVALWYTKTLIDRRQATFENGIRSYQIFSLTVPSITELYTLIPTVMSAIYTLTPAFKTLDRKTEIEPDTPDDSQPERIQGNIEFENVKFKYPSRPAVTVLDNFSLQIEAGLKVAFVGPSGAGKSSVLALLLRFYDPQAGKVLIDGKDIQKYNLRWLRTQIGLVQQEPLLFNCSIRDNICYGNNGASESEIVEVAKEANIHEFVSNLPNGYNTVVGEKGCQLSGGQKQRIAIARTLLKKPAILLLDEATSALDAESERIIVNALKAIHLKEDSGLCSRTTQITVAHRLSTVINSDTIIVLDKGKVVEMGSHTTLITKEAGVYSRLFRLQSFEETS 1257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00032 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 610 IPR027417 -
Cca03g00032 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 988 - -
Cca03g00032 1257 CDD ABC_MTABC3_MDL1_MDL2 1005 1251 - -
Cca03g00032 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 347 - -
Cca03g00032 1257 Gene3D ABC transporter type 1, transmembrane domain 960 1002 IPR036640 GO:0005524|GO:0016021
Cca03g00032 1257 SUPERFAMILY ABC transporter transmembrane region 677 991 IPR036640 GO:0005524|GO:0016021
Cca03g00032 1257 Gene3D ABC transporter type 1, transmembrane domain 37 946 IPR036640 GO:0005524|GO:0016021
Cca03g00032 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 997 1251 IPR027417 -
Cca03g00032 1257 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524
Cca03g00032 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 686 970 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g00032 1257 PANTHER BRACHYTIC2 21 1254 - -
Cca03g00032 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 52 339 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g00032 1257 SMART AAA_5 400 586 IPR003593 -
Cca03g00032 1257 SMART AAA_5 1032 1226 IPR003593 -
Cca03g00032 1257 Gene3D - 1003 1256 IPR027417 -
Cca03g00032 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1249 IPR003439 GO:0005524
Cca03g00032 1257 CDD ABC_MTABC3_MDL1_MDL2 373 610 - -
Cca03g00032 1257 Gene3D - 363 611 IPR027417 -
Cca03g00032 1257 Coils Coil 884 904 - -
Cca03g00032 1257 ProSitePatterns ABC transporters family signature. 1144 1158 IPR017871 GO:0005524
Cca03g00032 1257 SUPERFAMILY ABC transporter transmembrane region 37 355 IPR036640 GO:0005524|GO:0016021
Cca03g00032 1257 Pfam ABC transporter 391 540 IPR003439 GO:0005524
Cca03g00032 1257 Pfam ABC transporter 1023 1172 IPR003439 GO:0005524
Cca03g00032 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 373 609 IPR003439 GO:0005524
Cca03g00032 1257 Pfam ABC transporter transmembrane region 51 324 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g00032 1257 Pfam ABC transporter transmembrane region 687 949 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca03g00032 1257 PANTHER ABC TRANSPORTER B FAMILY 21 1254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00032 Cca-Chr3 534535 544118 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00032 22 1256 Calmodulin-binding Proteins AT2G36910 40.410 0.0 935