Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00019 ATGGAGTTGCGATTGGTCGAGTATTTTGCTGATCAGTTCAACGCCCAAGTTGGTGGTGGAGTGGATGTCAGGAAGTTTCCCAAAGCCATGGCTAAATTGAAGAAACAGGTTAAGCGAACCAAAGAAATTCTTAGTGCAAACACTGCAGCTCCTATTTCGGTTGAATCCCTCCATGATGACATCGACTTCAGGAGCACAATAACCCGTGAGAAATTTGAAGAGCTCTGTGAGGACATTTGGGAAAAATCGATTTCACCTGTGAAAGAGCTGCTTGAGCATTCTGGCCTATCATTGGAACAGATATATGCAGTGGAATTGATTGGAGGTGCCACCAGAGTGCCAAAATTACAGGCTAAGCTTCAAGAATTCCTTGGGAGAAAAGAACTTGATAGGCATCTTGATGCTGATGAAGCAATAGTTCTTGGTGCAGCTCTGCATGCCGCAAATTTAAGTGATGGAATCAAATTGAACCGCAAACTAGGAATGGTTGATGGTTCCTTATATGGATTTGTGGTTGAGTTGAATGGTCCTGATCTCGTGAAAGATGAAAGCTCTAGGCAGTTACTTGTACCACGAATGAAGAAAGTTCCGAGTAAGATGTTTAGATCCGTTAACCATAACAAAGATTTTGAAGTTTCACTAGCTTATGAAAGTGAGCATCATTTGCCTCCTGGCGTTACCTCTCCTGAAATTGCAAAATACCAGATATCTGGTTTGACAGATGCAAGTGAGAAATACTCATCTCGGAATCTGTCAGCCCCTATCAAGGCAAGCATACATTTTTCTATTAGTAGAAGTGGAATTCTTTCTCTGGATCGGGCAGACGCTGTTATTGAAATAACAGAGTGGGTGGAAGTTCCTAGGAAGAATTTGACCGTAGAGAATTCAACAATTTCATCAAATGTTTCGGCTGAATCTGCTACTAGTAACAATTCTGAGGAAAACAATGAAAGTATGCAAACTGATAGTGGGATTAGTAAGACATCCAACAGTAGTGCAGAGGAGGAAGCTACTGCTGAGCCTGCTACAGAGAAAAAGCTGAAAAAGCGGACCTTTAGGGTACCATTAAAGATTGTTGAGAATGGACCTGCAATGTCTCTATCACAAGATTTTATTGATGAAGCCAAAAGAAAATTACAAGCACTAGATCTAAAAGATGCAGAGAGAAAAAGAACAGCGGAGTTAAAAAATAATTTAGAAGGATATATATATTCTACGAAGGAAAAGATTGAAACTATTGAGGAGTTTGAAAAAGTTTCTACAAGTGAGGAACGTCAATCCTTCATTGAGAAGCTTGATCAGGTGCAAGATTGGTTGTATACAGATGGTGAAGATGCCAATGCAACAGAGTTTCAAGAGCGTCTAGATCAGTTAAAAGCTGTTGGAGATCCAATTTTCTTCAGGTTAAAAGAGCTCACAGCTAGACCAACAGCAGTTGAGCATGCTCATAAATACATTGATGAGTTGAAACAGATTGTTCAAGAGTGGAAAGCAAAAAAGTCTTGGCTTCCACAAGAAAGAGTAGATGAGGTTATAAAAAATTCTGAAAAATTAAAGAATTGGTTGGATGAGAAAGAAGCTGAGCAAAAGAATACTTCTGGATTCAGTAAGCCAGCATTTACATCTGAAGAAGTATATTTAAAGGTGCTTGATCTGCAAAATAAGGTTGCCAGCATTAATAAAATTCCCAAGCCGAAGCCTAAGGTTCAGAAGCCTGTAAAGAACGAAACTGAGAACAGTGAGCAGAATACAGATAATTCCGATTCTACTTCAACTGATAGTTCCTCCTCAAGTGATCCATCTGCTAACAATTCAGAAGGCACAAGTGAAGAAACAGATACTGAGCAACCCGAAGTTCATGATGAGCTATGA 1872 0.3969 MELRLVEYFADQFNAQVGGGVDVRKFPKAMAKLKKQVKRTKEILSANTAAPISVESLHDDIDFRSTITREKFEELCEDIWEKSISPVKELLEHSGLSLEQIYAVELIGGATRVPKLQAKLQEFLGRKELDRHLDADEAIVLGAALHAANLSDGIKLNRKLGMVDGSLYGFVVELNGPDLVKDESSRQLLVPRMKKVPSKMFRSVNHNKDFEVSLAYESEHHLPPGVTSPEIAKYQISGLTDASEKYSSRNLSAPIKASIHFSISRSGILSLDRADAVIEITEWVEVPRKNLTVENSTISSNVSAESATSNNSEENNESMQTDSGISKTSNSSAEEEATAEPATEKKLKKRTFRVPLKIVENGPAMSLSQDFIDEAKRKLQALDLKDAERKRTAELKNNLEGYIYSTKEKIETIEEFEKVSTSEERQSFIEKLDQVQDWLYTDGEDANATEFQERLDQLKAVGDPIFFRLKELTARPTAVEHAHKYIDELKQIVQEWKAKKSWLPQERVDEVIKNSEKLKNWLDEKEAEQKNTSGFSKPAFTSEEVYLKVLDLQNKVASINKIPKPKPKVQKPVKNETENSEQNTDNSDSTSTDSSSSSDPSANNSEGTSEETDTEQPEVHDEL 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00019 623 MobiDBLite consensus disorder prediction 576 610 - -
Cca03g00019 623 Gene3D - 131 148 - -
Cca03g00019 623 ProSitePatterns Heat shock hsp70 proteins family signature 3. 104 118 IPR018181 -
Cca03g00019 623 MobiDBLite consensus disorder prediction 298 337 - -
Cca03g00019 623 PANTHER HEAT SHOCK 70 KDA PROTEIN 17 1 556 - -
Cca03g00019 623 PANTHER HSC70CB, ISOFORM G-RELATED 1 556 - -
Cca03g00019 623 MobiDBLite consensus disorder prediction 557 623 - -
Cca03g00019 623 SUPERFAMILY Actin-like ATPase domain 2 150 IPR043129 -
Cca03g00019 623 PRINTS 70kDa heat shock protein signature 254 270 - -
Cca03g00019 623 PRINTS 70kDa heat shock protein signature 101 117 - -
Cca03g00019 623 PRINTS 70kDa heat shock protein signature 133 153 - -
Cca03g00019 623 MobiDBLite consensus disorder prediction 298 346 - -
Cca03g00019 623 Pfam Hsp70 protein 3 350 IPR013126 GO:0005524|GO:0140662
Cca03g00019 623 Pfam Hsp70 protein 365 467 IPR013126 GO:0005524|GO:0140662
Cca03g00019 623 SUPERFAMILY Heat shock protein 70kD (HSP70), C-terminal subdomain 394 477 IPR029048 -
Cca03g00019 623 Gene3D - 83 130 - -
Cca03g00019 623 Gene3D Actin; Chain A, domain 4 3 82 - -
Cca03g00019 623 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 158 353 IPR029047 -
Cca03g00019 623 Gene3D - 367 480 IPR029048 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00019 Cca-Chr3 392633 401058 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00019 4 469 Calmodulin-binding Proteins AT3G12580 25.474 1.01e-30 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00019 K09486 - gmx:100786898 1023.85