Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00013 ATGGCATCATCCTCTTCACACACATGGATTCCTCTCTCTTATTGTTCTCGCCCTAACACGAACGTCAACATTCCCAGCCCAATCCTTACCTTCCCAAACATCATCAGCAGAAGAATAAGCGCTTCCATCAACGCCGAAACCCTCAATTTCTCCGACTCCTTCGAACCCGCCGGATTCGGGCCAGACTCCGACCCGAATCCGCCCCCCGATGACCCTCCGTGCCCGCCCGGTCTCCGACAGTACGAAACGATGGCCGTTTTGAGACCCGACATGACCGAGGACGAGCGACTTGTACTCACTCACAAGTACGAGGAGCTACTTGTTGCAGGAGGCGGCATGTATATAGATGTTTTTAACAGAGGAGTTATTCCACTAGCATATAGCATCAGGAGGAAAAACAAGGCAGGAGAGACCAACACTTACGTTGATGGTGTTTTTGTAGCAGTGGATAATTACAAGAGAGGTGATGGAATTTCTGACATCACTTGCGGGATGGAAATCAAACATTCAAGAAACAAACCAAGGAAATCCAATTCTCTCGGAATAGCAAATTATCACACCAAATATATATCTTGTTGCAAGAGGTTTATGAATGTCATGAGTGTTCCAGAAGCTGCAACTAGCCCTCCTCCACATCTGTATCCACAGGAACTTCAGCTTAAGCTTTACCAAGCCTTCATATTCTCAATTCCAATACTCTTTTCCATCATTCTCTTTCTCTTGTTCTACTTGTTCTACCTCAAGAGGAGGGCTTCCTCTCTCTCTTCCTCTTCTCCACAATTGCTTCCACGGACCATTGCCAATCCACCTAGATATCATTCCTCACCTTGTCGTTTGGATCTCACCCTCCAATTCCTGGATAAACTTCCAAGAATTTTGTTTGATGAGGATTTGCTAGCGAGGGATTCAATATGTTGTGTGTGTCTGGGGGAATTTGAGGTGAAAGAAGAGGTTGTTGAGATTCCTTATTGCAAGCACGTGTTCCACTTGGATTGCATACATCACTGGCTTCAATCAAATTCCACTTGTCCACTTTGTAGATGTTCCATCATTCCCACTACCAAGTTTCTCAACCCAGCACCTCCTATTAATATTATATCAGACCCACCCCAGCAACATGGTGCTATCATTTTGGACTCTCCATTACAAATCCTATCACTGCCACCTCACCCACAAGATCATGAACTTGGTGATTCCTCAAATGCTGCTAATTTGCCAAGGGAATGA 1227 0.4531 MASSSSHTWIPLSYCSRPNTNVNIPSPILTFPNIISRRISASINAETLNFSDSFEPAGFGPDSDPNPPPDDPPCPPGLRQYETMAVLRPDMTEDERLVLTHKYEELLVAGGGMYIDVFNRGVIPLAYSIRRKNKAGETNTYVDGVFVAVDNYKRGDGISDITCGMEIKHSRNKPRKSNSLGIANYHTKYISCCKRFMNVMSVPEAATSPPPHLYPQELQLKLYQAFIFSIPILFSIILFLLFYLFYLKRRASSLSSSSPQLLPRTIANPPRYHSSPCRLDLTLQFLDKLPRILFDEDLLARDSICCVCLGEFEVKEEVVEIPYCKHVFHLDCIHHWLQSNSTCPLCRCSIIPTTKFLNPAPPINIISDPPQQHGAIILDSPLQILSLPPHPQDHELGDSSNAANLPRE 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00013 408 Pfam Ribosomal protein S6 80 135 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00013 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 352 IPR013083 -
Cca03g00013 408 MobiDBLite consensus disorder prediction 61 76 - -
Cca03g00013 408 MobiDBLite consensus disorder prediction 54 77 - -
Cca03g00013 408 SMART ring_2 305 346 IPR001841 -
Cca03g00013 408 SUPERFAMILY RING/U-box 283 358 - -
Cca03g00013 408 SUPERFAMILY Ribosomal protein S6 78 135 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00013 408 Pfam Ring finger domain 305 347 IPR001841 -
Cca03g00013 408 Gene3D - 77 161 IPR014717 -
Cca03g00013 408 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 35 148 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Cca03g00013 408 MobiDBLite consensus disorder prediction 389 408 - -
Cca03g00013 408 PANTHER 30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC 35 148 - -
Cca03g00013 408 ProSiteProfiles Zinc finger RING-type profile. 305 347 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00013 Cca-Chr3 284882 301824 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00013 200 375 C3H Transcription Factor Family AT4G10150 33.702 2.70e-33 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00013 K19039 - gmx:100813129 328.561