LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g00012	ATGACGGAGGTGGCCAGATCAGTGGTGCACGACGTTTTGGGGCAAAGAGTCGACGACGTAGACCAGCCAATCGTCGATTACATCGTCAACGTCCTCGCCGACGATGACTTCGACTTCGGCCTCCACGGCCAAGGCGCCTTCGAAGCCCTCGGCGAGCTCCTAGTCGCCGCCGGCTGCGTCGACGATTTCTCTGAGTGCCGCTCCGTGTGCAGCACGCTCTGCGACAAGTTCGGCAAGCACGGTTTGGTGAAGGAGAAGCCGGCGGTGCGAAGCCTGGCGGCGCCGTTTCGGATGAACGAAGGAATGGACGACGGAGAAGCTCCGAAGAAGAAGCCGGAGCCCGTGGACGGCCCTCTGCTATCGGAACGCGACCGTTTGAAGCTGGAGCGGCGGAAGCGCAAGGAGGAGCGTCAGCGCGAGGCGCAGTTCCAGATGCATCTCGCAGAGATGGAGGCCGCACGTGCGGGGATGCCGGTGGTGTGCGTGCGGCACGACAACAGCGGAGGACCCAACGTGAAGGACATTCACATGGAGGGCTTCAACATCTCCGTTGGTGGGCGCGATCTCATTGTGGACGGCGCCGTCACGCTTTCTTTCGGGAGGCATTACGGTTTGGTGGGAAGGAATGGAACGGGGAAAACCACTTTCCTTAGGCACATGGCTATGCATGCCATTGATGGCGTTCCCAGGAATTGTCAGATACTTCACGTCGAGCAGGAGGTCACGGGTGATGATATCACCGCCTTGCAGTGTGTCCTCAACTCCGACATTGAGAGGACTCAGCTTCTCACCGAAGAAGCCCAGTTACTCGCCAAACAGAGGGAATTGGAGGACAAAGTTGAAAAGGGTGATTCGAATGGAGTGGCTGATAGGGATGGCATTTCAGCAAGGCTTCAGGAAATATACAAGAGGCTTGAACTCATTGATGCTGATTCTGCAGAGGCAAGAGCGGCATCGATACTAGCGGGTTTGAGTTTCTCTCCCGAGATGCAGAAGAAGCCAACAAAAACATTTTCTGGAGGATGGCGGATGCGAATAGCTCTTGCTCGTGCACTGTTTATAGAGCCTGATATATTGCTTCTTGATGAGCCTACGAATCATCTTGATCTTCATGCTGTCTTATGGCTTGAATCATACTTGGTTAAATGGCCAAAAACATTTATTGTCGTTTCTCATGCTAGAGAATTTTTAAACACGGTTGTTACTGATATAATTCACTTACAAAACCAAAAGCTGACTACTTATAAAGGGGATTATGATACTTTTGAGAAGACTCGACAAGAACAAGTTAAAAATCAGCAAAAAGCATTAGAGGCAAATGAGCGTGCAAGATCTCATATGCAGACCTTCATTGACAAGTTCCGTTATAATGCGAAGAGGGCATCACTTGTTCAATCCAGAATCAAGGCTTTGGAGCGAATGGGCCATGTAGATGAAATTGTTAATGATCCTGACTACAAATTTGAGTTCCCCACTCCAGATGATAGACCTGGTGCACCAATTATAAGTTTCAGTGATGCATCATTTGGTTATCCTGGAGGGCCCACTCTGTTTAGGAATTTGAACTTTGGGATTGATCTTGACAGCCGAATTGCAATGGTTGGACCAAATGGCATTGGCAAATCAACTATACTTAAGTTAATTGCTGGGGACCTACAGCCCAGTTCTGGAACTGTCTTCCGTTCTGCTAAGGTTCGTATAGCAGTGTTCAGTCAGCACCATGTTGATGGACTGGACTTATCGTCAAATCCTCTTCTGTATATGATGCGCTGCTATCCTGGAGTTCCAGAACAGAAGCTTCGAGCTCACTTAGGTTCTTTTGGTGTAACCGGAAATCTCGCACTGCAGCCAATGTATACTTTGTCAGGTGGTCAGAAAAGCAGGGTTGCCTTTGCAAAGATAACATTTAAGAAGCCACACATAATATTGCTTGATGAGCCATCCAATCATCTGGATTTGGATGCTGTTGAGGCTCTTATTCAAGGTCTTGTGTTGTTCCAAGGAGGCATTCTCATGGTGAGTCACGATGAGCACCTTATCTCTGGAAGTGTGGAGGAACTATGGGTTGTATCCCAAGGAAGAGTGACACCATTCCATGGCACATTCCAAGATTATAAGAAGATACTCCAATCATCCTAG	2139	0.4914	MTEVARSVVHDVLGQRVDDVDQPIVDYIVNVLADDDFDFGLHGQGAFEALGELLVAAGCVDDFSECRSVCSTLCDKFGKHGLVKEKPAVRSLAAPFRMNEGMDDGEAPKKKPEPVDGPLLSERDRLKLERRKRKEERQREAQFQMHLAEMEAARAGMPVVCVRHDNSGGPNVKDIHMEGFNISVGGRDLIVDGAVTLSFGRHYGLVGRNGTGKTTFLRHMAMHAIDGVPRNCQILHVEQEVTGDDITALQCVLNSDIERTQLLTEEAQLLAKQRELEDKVEKGDSNGVADRDGISARLQEIYKRLELIDADSAEARAASILAGLSFSPEMQKKPTKTFSGGWRMRIALARALFIEPDILLLDEPTNHLDLHAVLWLESYLVKWPKTFIVVSHAREFLNTVVTDIIHLQNQKLTTYKGDYDTFEKTRQEQVKNQQKALEANERARSHMQTFIDKFRYNAKRASLVQSRIKALERMGHVDEIVNDPDYKFEFPTPDDRPGAPIISFSDASFGYPGGPTLFRNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGDLQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCYPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIILLDEPSNHLDLDAVEALIQGLVLFQGGILMVSHDEHLISGSVEELWVVSQGRVTPFHGTFQDYKKILQSS	712

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca03g00012	712	PANTHER	ATP-BINDING TRANSPORT PROTEIN-RELATED	121	711	-	-
	Cca03g00012	712	CDD	ABCF_EF-3	175	411	-	-
	Cca03g00012	712	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	175	434	IPR003439	GO:0005524
	Cca03g00012	712	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	483	705	IPR027417	-
	Cca03g00012	712	PANTHER	NON-TRANSPORTER ABC PROTEIN	121	711	-	-
	Cca03g00012	712	MobiDBLite	consensus disorder prediction	102	140	-	-
	Cca03g00012	712	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	175	438	IPR027417	-
	Cca03g00012	712	ProSitePatterns	ABC transporters family signature.	338	352	IPR017871	GO:0005524
	Cca03g00012	712	Gene3D	-	464	712	IPR027417	-
	Cca03g00012	712	Gene3D	-	127	447	IPR027417	-
	Cca03g00012	712	ProSiteProfiles	ATP-binding cassette, ABC transporter-type domain profile.	502	711	IPR003439	GO:0005524
	Cca03g00012	712	MobiDBLite	consensus disorder prediction	94	140	-	-
	Cca03g00012	712	CDD	ABCF_EF-3	502	694	-	-
	Cca03g00012	712	SMART	AAA_5	199	411	IPR003593	-
	Cca03g00012	712	SMART	AAA_5	527	694	IPR003593	-
	Cca03g00012	712	Pfam	ABC transporter	405	485	IPR032781	-
	Cca03g00012	712	Pfam	ABC transporter	519	649	IPR003439	GO:0005524
	Cca03g00012	712	Pfam	ABC transporter	195	366	IPR003439	GO:0005524
	Cca03g00012	712	ProSitePatterns	ABC transporters family signature.	621	635	IPR017871	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g00012	Cca-Chr3	267389	278793	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g00012	458	663	Calmodulin-binding Proteins	AT2G36910	26.749	5.21e-11	64.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g00012	K06158		-	gmx:547980	1327