Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00010 ATGGCAGATTCCCACCTTCTCCAGAAAGATCCTACCTCCAGATACTCGCGGTACGATGAAATTTTGGGCAAAGGAGCCTTCAAGACTGTATACAAGGCGTTTGACGAAGTGGACGGAATCGAAGTTGCGTGGAACAGAATCAGCTTTGATAACGTTGCGCATACGCAGCAACAGAAGGGAAAGTTGTTTTCGGAGGTTCACTTGCTCAAGTCGTTGAAGCACGAGAATGTCATCAAGTTGTATAATTCTTGGGTCGATGAGAGCACCGGCACCATCAACATGATCACCGAGTTGTTCACCTCGGGGAGTTTGAGACAGTACCGTAAGAAGCATAAGAATGTGGATATGAAAGCCATCAAGAACTGGGCACGGCAGATTCTTCGTGGCTTGTGCTTTCTGCACAGTCACAGTCCTCCTGTCATTCATAGGGACCTGAAATGTGATAATATTTTTGTCAATGGTAATAGTGGACTGGTAAAGATTGGAGATCTTGGATTGGCAACTGTCATGCAGCAGCCTACTGCCCGAAGTGTCATTGGTACACCGGAGTTCATGGCCCCAGAGCTTTATGAGGAAGAGTACAATGAACTTGTTGACATATATTCCTTTGGAATGTGTATCTTAGAAATGGTCACCTGTGAGTACCCGTATAGTGAGTGTAAAAATCCAGCGCAGATATATAAGAAAGTGACCTCTGGTATAAAACCTGCTGCTCTTGCTAATGTAACTGATCCTGAAGTGAAGCAATTCATAGAGAAGTGTCTAGTTCCAGCATCTATGAGATTGTCAGCATCTGAACTATTGAAAGACCCATTCCTTGCAACTGAAAATGCAAAGGAGGTCAATCACGATACACTGCAGCTGCCTACTCCTCGCACCAAATTGGTGAACGCTCCAATGTGTGAGCCTCGTCCCATGGAGATAGATTCTAATTCCAGGCGAACTTCACCTGGCTCCTCTGTGGAAAGAATTGAAGAAGCTTCTCAAGTTTCAATTTTTGATCTCGTTAGGATGACTGAGAATAATGAATTTAGGTTAAGAGGAGAGAAAAATGCTGAAAGTACAATTTCACTTACACTGCGAATTGCAGATGCACGTGGTGGAGCGAGGAATATCCATTTTCCATTCTATATCGATTCTGATACAGCAATTTCCATTGCTGAGGAGATGGTGGAACATCTGGAACTTACACATGAGGATGTAGCTGTCATTGCTGAGCTAATACACGACATGATCGTTAAGCTTGTGCCCAACTGGAAACCCTTATCTGAGAATCTCTCATCTGAAACAGATCATTTATACAGGCCTTCTTCAGAAGTTCAGAATGGTGAAGTAAACTGTCATTGGCCAATACGATCAAGTGATTATGATATGAAGACAGTGTATGAGGATCTAGTTCAGTCACGGCCTGTGGATGGGGATGATCAGGAGAAACGAGGATCTGTTATGTCAGATATATCAGCGGACTGTGGGCTTACAAATCCATCAGATTCTAAAGTTCTAGAACCTGACATTTTTATTTTTGATGAATTCTGGGAGGGTTTCGATGGAGTCAATTCCAATTCAGATGTCGGGTTTTGTGGGCAAGAGGATGGACACAAGAATCAATCCGATAACTCAGCAGGCTCTTTAATCAATTCATGTTGCAGCCCGTCCAAAATCTTTGACATGTCAAGCACATGTTCTCTTACTCTAGTTGACAAAGATTATTCAAACGAACTGCAGTTGGAGCTTGAAGCAATTGAAACACAATATCAACAATGCTTTCGTGAACTTGTGAAGATAAGAGAGGAAGCCATTGAAAATGCAAAAAGGAGATGGATAACAAGGAAGAAAATACCAGTTATGTGA 1851 0.4263 MADSHLLQKDPTSRYSRYDEILGKGAFKTVYKAFDEVDGIEVAWNRISFDNVAHTQQQKGKLFSEVHLLKSLKHENVIKLYNSWVDESTGTINMITELFTSGSLRQYRKKHKNVDMKAIKNWARQILRGLCFLHSHSPPVIHRDLKCDNIFVNGNSGLVKIGDLGLATVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMCILEMVTCEYPYSECKNPAQIYKKVTSGIKPAALANVTDPEVKQFIEKCLVPASMRLSASELLKDPFLATENAKEVNHDTLQLPTPRTKLVNAPMCEPRPMEIDSNSRRTSPGSSVERIEEASQVSIFDLVRMTENNEFRLRGEKNAESTISLTLRIADARGGARNIHFPFYIDSDTAISIAEEMVEHLELTHEDVAVIAELIHDMIVKLVPNWKPLSENLSSETDHLYRPSSEVQNGEVNCHWPIRSSDYDMKTVYEDLVQSRPVDGDDQEKRGSVMSDISADCGLTNPSDSKVLEPDIFIFDEFWEGFDGVNSNSDVGFCGQEDGHKNQSDNSAGSLINSCCSPSKIFDMSSTCSLTLVDKDYSNELQLELEAIETQYQQCFRELVKIREEAIENAKRRWITRKKIPVM 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00010 616 Gene3D Phosphorylase Kinase; domain 1 2 97 - -
Cca03g00010 616 ProSiteProfiles Protein kinase domain profile. 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00010 616 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 356 412 IPR024678 GO:0004674|GO:0005524
Cca03g00010 616 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00010 616 MobiDBLite consensus disorder prediction 470 490 - -
Cca03g00010 616 ProSitePatterns Serine/Threonine protein kinases active-site signature. 140 152 IPR008271 GO:0004672|GO:0006468
Cca03g00010 616 Coils Coil 571 598 - -
Cca03g00010 616 SUPERFAMILY Protein kinase-like (PK-like) 18 320 IPR011009 -
Cca03g00010 616 SMART serkin_6 16 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g00010 616 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 3 611 - -
Cca03g00010 616 CDD STKc_WNK 14 273 - -
Cca03g00010 616 Gene3D Transferase(Phosphotransferase) domain 1 99 281 - -
Cca03g00010 616 PANTHER WNK KINASE 3 611 - -
Cca03g00010 616 Gene3D - 354 444 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00010 Cca-Chr3 233582 236772 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00010 1 615 MAP Kinase Kinase Kinase AT5G41990 52.922 0.0 574
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Cca03g00010 Pkinase 5.8e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00010 K08867 - gmx:100272202 1016.14