Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g00003 ATGAAAGGGCAGAGCAGAGAATTCATTGATTCGGCTTCTTCGTCGGTTGTGTCAAACGCACTTCATCAGCGCCTCCAATTCCTACTGCAGAGCCGTCCCGAGTGGTGGGTCTACGCCATCTTCTGGAAAGCCACGAAAGACAGCGATTCCCGTCTCACATTAGAATATGGCGATGGTTACTTCCGCAAGGAGGAAAAGGAAACGAGGAACGTGAACCACAACATGGAATGGTTTTACAGGCTGTCTCAAACCCGTTCCTATGTTGCCGGCGACGGTGTCGTTGGCTGTGCCTTCAGCTCAGCAGTAGATGTTTGGCTGAGTGGAGTGAACGAGTTTGAACTGAACGAGTGCGACGACAGAGTCAGGGAAGCTCGCAGTCATGGGATCCATACTTTAGTATGCGTTTCCACGCCACGTGGCATCCTTGAGCTCGGCTCCTGCCACGTCTTCACCCTCGATTACAGCCTTCTCCAACTGGCCAAATCAGTGTTTGAAGTGAACAACGTTGTTCCAGAGAAAGAGAAACAGAGAAGAAGAGACTCGTCTGATGCTTCCACCGACTCTTCCGAAGCAGACGCTAATTTGGCTTTGGGATACTGGCCTGTTGCTCCCACCGCCCCTTCCGATGCAGACGCTAATTTGGCTTTGGCGTTGGCGGAAGGCAGTAATATTAATAACCTAAGAAGGGCACGTGAGGGTGAGGCGCTGCCTATAAATCACGTGGAGGCTGAGAGGCAGCGACGCGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCAGCGGTCCCTAACGTCTCCAAGATGGACAAAGCATCCTTGCTTTCGGACGCGGTGGCCTACATTAATGAACTGAAGGCCAAAATCAATCACCTGGAGGTTGAATTAGAGGGCAATATCAAACAGGATCATGTCCAGACCCAAACCATTCATTCCTCCACCACCACTAACATGAGAGTTGAAGTAAGGATCTTAGGATCCGAGGCCATGGTGAGGGTCCAGAGCCTAAACGTGAACCACCCCTCTGCCAGGCTAATGGATGCTCTCAGGGACGTCAATTTGCAAATTCTACATGCCACAATGTCCAACATCAAAGAGATGATGCTGCAAGACGTCGTCGTTAGGGTTCCGCATGACCTCATGACCGAAGACGCCCTAAAAAATGCCATTCTCAACAGACTCTCAGAGTAA 1188 0.5076 MKGQSREFIDSASSSVVSNALHQRLQFLLQSRPEWWVYAIFWKATKDSDSRLTLEYGDGYFRKEEKETRNVNHNMEWFYRLSQTRSYVAGDGVVGCAFSSAVDVWLSGVNEFELNECDDRVREARSHGIHTLVCVSTPRGILELGSCHVFTLDYSLLQLAKSVFEVNNVVPEKEKQRRRDSSDASTDSSEADANLALGYWPVAPTAPSDADANLALALAEGSNINNLRRAREGEALPINHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVAYINELKAKINHLEVELEGNIKQDHVQTQTIHSSTTTNMRVEVRILGSEAMVRVQSLNVNHPSARLMDALRDVNLQILHATMSNIKEMMLQDVVVRVPHDLMTEDALKNAILNRLSE 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g00003 395 PANTHER MYC 16 393 IPR045084 GO:0003700|GO:0006355
Cca03g00003 395 Gene3D - 229 301 IPR036638 GO:0046983
Cca03g00003 395 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 235 284 IPR011598 GO:0046983
Cca03g00003 395 PANTHER TRANSCRIPTION FACTOR MYC2-LIKE 16 393 - -
Cca03g00003 395 Pfam Helix-loop-helix DNA-binding domain 239 284 IPR011598 GO:0046983
Cca03g00003 395 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 21 164 IPR025610 -
Cca03g00003 395 Coils Coil 274 301 - -
Cca03g00003 395 SMART finulus 241 290 IPR011598 GO:0046983
Cca03g00003 395 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 237 305 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g00003 Cca-Chr3 60155 61613 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g00003 13 394 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00870 33.570 2.86e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g00003 bHLH-MYC_N 6.8e-17 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g00003 - K13422 gmx:100777730 520.776