LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca03g00003	ATGAAAGGGCAGAGCAGAGAATTCATTGATTCGGCTTCTTCGTCGGTTGTGTCAAACGCACTTCATCAGCGCCTCCAATTCCTACTGCAGAGCCGTCCCGAGTGGTGGGTCTACGCCATCTTCTGGAAAGCCACGAAAGACAGCGATTCCCGTCTCACATTAGAATATGGCGATGGTTACTTCCGCAAGGAGGAAAAGGAAACGAGGAACGTGAACCACAACATGGAATGGTTTTACAGGCTGTCTCAAACCCGTTCCTATGTTGCCGGCGACGGTGTCGTTGGCTGTGCCTTCAGCTCAGCAGTAGATGTTTGGCTGAGTGGAGTGAACGAGTTTGAACTGAACGAGTGCGACGACAGAGTCAGGGAAGCTCGCAGTCATGGGATCCATACTTTAGTATGCGTTTCCACGCCACGTGGCATCCTTGAGCTCGGCTCCTGCCACGTCTTCACCCTCGATTACAGCCTTCTCCAACTGGCCAAATCAGTGTTTGAAGTGAACAACGTTGTTCCAGAGAAAGAGAAACAGAGAAGAAGAGACTCGTCTGATGCTTCCACCGACTCTTCCGAAGCAGACGCTAATTTGGCTTTGGGATACTGGCCTGTTGCTCCCACCGCCCCTTCCGATGCAGACGCTAATTTGGCTTTGGCGTTGGCGGAAGGCAGTAATATTAATAACCTAAGAAGGGCACGTGAGGGTGAGGCGCTGCCTATAAATCACGTGGAGGCTGAGAGGCAGCGACGCGAGAAGCTGAATCAGAGATTCTACGCTCTTCGCTCAGCGGTCCCTAACGTCTCCAAGATGGACAAAGCATCCTTGCTTTCGGACGCGGTGGCCTACATTAATGAACTGAAGGCCAAAATCAATCACCTGGAGGTTGAATTAGAGGGCAATATCAAACAGGATCATGTCCAGACCCAAACCATTCATTCCTCCACCACCACTAACATGAGAGTTGAAGTAAGGATCTTAGGATCCGAGGCCATGGTGAGGGTCCAGAGCCTAAACGTGAACCACCCCTCTGCCAGGCTAATGGATGCTCTCAGGGACGTCAATTTGCAAATTCTACATGCCACAATGTCCAACATCAAAGAGATGATGCTGCAAGACGTCGTCGTTAGGGTTCCGCATGACCTCATGACCGAAGACGCCCTAAAAAATGCCATTCTCAACAGACTCTCAGAGTAA	1188	0.5076	MKGQSREFIDSASSSVVSNALHQRLQFLLQSRPEWWVYAIFWKATKDSDSRLTLEYGDGYFRKEEKETRNVNHNMEWFYRLSQTRSYVAGDGVVGCAFSSAVDVWLSGVNEFELNECDDRVREARSHGIHTLVCVSTPRGILELGSCHVFTLDYSLLQLAKSVFEVNNVVPEKEKQRRRDSSDASTDSSEADANLALGYWPVAPTAPSDADANLALALAEGSNINNLRRAREGEALPINHVEAERQRREKLNQRFYALRSAVPNVSKMDKASLLSDAVAYINELKAKINHLEVELEGNIKQDHVQTQTIHSSTTTNMRVEVRILGSEAMVRVQSLNVNHPSARLMDALRDVNLQILHATMSNIKEMMLQDVVVRVPHDLMTEDALKNAILNRLSE	395

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Cca03g00003	395	PANTHER	MYC	16	393	IPR045084	GO:0003700\|GO:0006355
Cca03g00003	395	Gene3D	-	229	301	IPR036638	GO:0046983
Cca03g00003	395	ProSiteProfiles	Myc-type, basic helix-loop-helix (bHLH) domain profile.	235	284	IPR011598	GO:0046983
Cca03g00003	395	PANTHER	TRANSCRIPTION FACTOR MYC2-LIKE	16	393	-	-
Cca03g00003	395	Pfam	Helix-loop-helix DNA-binding domain	239	284	IPR011598	GO:0046983
Cca03g00003	395	Pfam	bHLH-MYC and R2R3-MYB transcription factors N-terminal	21	164	IPR025610	-
Cca03g00003	395	Coils	Coil	274	301	-	-
Cca03g00003	395	SMART	finulus	241	290	IPR011598	GO:0046983
Cca03g00003	395	SUPERFAMILY	HLH, helix-loop-helix DNA-binding domain	237	305	IPR036638	GO:0046983

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca03g00003	Cca-Chr3	60155	61613	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca03g00003	13	394	Basic Helix-Loop-Helix Transcription Factor Gene Family	AT4G00870	33.570	2.86e-54	183

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bHLH	Cca03g00003		bHLH-MYC_N	6.8e-17	CL0161

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca03g00003	-		K13422	gmx:100777730	520.776

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