Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02915 ATGGGTTGTTTTTCTTGTTTCGATTCGAGGGAGGATGAGAAGCTGAATCCCAATCCTCAGCAGGAAACGAATCATCATGACCATGAGCTTAAGCCCCCTGTCCCCTCTCGTATTTCCAGATTGCCCTCTGCCTCTGGAGCAGAGAAGCTAAGGTCAACAAGTAATGGAGACTCGAATGGGGAATTGGCTGCTCTCAAGGACGGACCCGCTGTTCAAATTGCCGCTCAAACGTTTACTTTCCGTGAGCTTGCAGCCGCAACCAAGAACTTTAGGCCCCAGTCCTTTTTGGGGGAAGGTGGTTTCGGAAGGGTCTACAAGGGCCGTCTCGAAACCACGGGTCAGGTTGTGGCTGTAAAACAATTAGACAGAAATGGTCTTCAGGGTAATCGGGAATTCCTTGTGGAGGTTCTCATGCTCAGTCTTCTACACCACCCTAATCTTGTGAATCTAATTGGATACTGTGCAGATGGGGACCAACGCCTCTTAGTTTATGAATTCATGCCAATGGGGTCATTGGAAGACCATCTTCATGATCTTCCCCCGGATAAGGAGCCATTAGATTGGAACACCAGGATGAAAATAGCTGCTGGGGCAGCAAAAGGATTAGAATACCTTCATGACAAAGCAAATCCTCCTGtcatttatagagacttcaaatcatctaatatattacttgacgaaggttatcatccaaaactttcagacttcggtcttgcaaagctcggtccagttggtgacaaatcacatgtttccacccgtgtcatgggaacttatggttactgtgccccagaatatgctatgaccggacagctgactgtgaagtctgatgtatatagttttggggtagtcttcttggagctaattactgggcgtaaagccattgacagcacccgaccccatggagaacaaaacctggtcacatggGCACGTCCACTGTTCAACGACCGCAGGAAGTTTCCAAAGTTAGCAGATCCACAGCTGCAGGGGCGGTATCCCATGCGGGGTCTTTACCAAGCTCTAGCTGTGGCATCAATGTGCATTCAAGAGCAGGCGGCAGCGCGTCCTCTCATTGGGGATGTGGTGACAGCCCTTTCTTTTCTAGCAAACCAGGCATTTGACCATAGGGGAGCTGGTGAAGATAAAAGGAACAGAGATGATAAAGGAGGAAGAATATTGAAAAATGATGAAGGTGGAGGATCTGGACGCAGATGGGATTTGGAAGGATCTGAGAAAGATGAGTCCCCTCGTGAAACTGCAAGGATGTTAAACAACATGCATCTTGATAGAGAACGTGCGGTGGCTGAAGCCAAGATGTGGGGAGAGAACTGGAGGGAGAAAAGACGACAAAGTTCTACTTTGTTTAGAATCTGTCTTGCGCCGCAACCAAACATAATGAACCGGGCCAAAATGCTTGTTCCTACTCGCCTGGGTTTTTTGAGCTAA 1443 0.3881 MGCFSCFDSREDEKLNPNPQQETNHHDHELKPPVPSRISRLPSASGAEKLRSTSNGDSNGELAALKDGPAVQIAAQTFTFRELAAATKNFRPQSFLGEGGFGRVYKGRLETTGQVVAVKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEFMPMGSLEDHLHDLPPDKEPLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDFKSSNILLDEGYHPKLSDFGLAKLGPVGDKSHVSTRVMGTYGYCAPEYAMTGQLTVKSDVYSFGVVFLELITGRKAIDSTRPHGEQNLVTWARPLFNDRRKFPKLADPQLQGRYPMRGLYQALAVASMCIQEQAAARPLIGDVVTALSFLANQAFDHRGAGEDKRNRDDKGGRILKNDEGGGSGRRWDLEGSEKDESPRETARMLNNMHLDRERAVAEAKMWGENWREKRRQSSTLFRICLAPQPNIMNRAKMLVPTRLGFLS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02915 480 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 415 453 - -
Cca02g02915 480 SUPERFAMILY Protein kinase-like (PK-like) 72 366 IPR011009 -
Cca02g02915 480 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Cca02g02915 480 ProSitePatterns Protein kinases ATP-binding region signature. 96 119 IPR017441 GO:0005524
Cca02g02915 480 ProSiteProfiles Protein kinase domain profile. 90 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02915 480 MobiDBLite consensus disorder prediction 1 63 - -
Cca02g02915 480 Gene3D Transferase(Phosphotransferase) domain 1 167 387 - -
Cca02g02915 480 MobiDBLite consensus disorder prediction 7 34 - -
Cca02g02915 480 MobiDBLite consensus disorder prediction 376 417 - -
Cca02g02915 480 MobiDBLite consensus disorder prediction 46 60 - -
Cca02g02915 480 PANTHER OS07G0668900 PROTEIN 415 453 - -
Cca02g02915 480 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 2 390 - -
Cca02g02915 480 Gene3D Phosphorylase Kinase; domain 1 74 166 - -
Cca02g02915 480 Pfam Protein kinase domain 93 298 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca02g02915 480 CDD STKc_IRAK 96 364 - -
Cca02g02915 480 PANTHER OS07G0668900 PROTEIN 2 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02915 Cca-Chr2 50661034 50665253 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02915 1 451 Glycoside Hydrolase AT3G07070 56.550 9.61e-173 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Cca02g02915 Pkinase 1.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02915 K13430 - gmx:100777987 838.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca02g02915 02 50661034 50665253 Cca03g02334 03 44295295 44298570 ECH
Cca02g02915 02 50661034 50665253 Cca02g02915 02 50661034 50665253 ECH