Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02912 ATGTCCATGGCGGCAGCATTTACAACTGCAACTGCAACACCGAGACTGTCAAATGTTGGAGAAACCAAAGCTTTGAACCGTAACCCTAATTCTAACCTTAAGCTTGTGCGAGGGTTTGGGTTTGGCGGTTGTTCTGTGAGTGTGAAAGGGGCAACAAGGGGAAGCAGAAGCGTTCGTGTTGTTGCGAGTTCTTCTTTGGAGGCAAGTGTGCAGTCAAAAGTGACTCAGAAAGTATACTTTGACATCAGTATTGGGAATCCAGTTGGTAAGCTTGCGGGACGGATTGTGATTGGACTATACGGCGACGATGTCCCCCAAACAGCGGAGAACTTCCGCGCCCTTTGCACTGGAGAGAAGGGCTTTGGCTATAAGGGCTCTTCCTTCCATCGTGTCATCAAGGATTTCATGATTCAAGGAGGCGACTTTGACAAAGGAAATGGAACTGGAGGCAAAAGTATATATGGTCGTACTTTCAAAGATGAGAATTTTAAATTGTCTCATACTGGACCAGGAGTTGTTAGCATGGCAAATGCAGGTCCCAACACAAATGGGAGTCAGTTTTTCATATGCACTGTCAAGACACCATGGCTGGATCAGAGGCATGTAGTATTTGGCCAAGTTTTGGAAGGCATGGATATTGTTAGGTTGATTGAATCACAGGAGACAGATAGGGGTGACCGTCCTAGGAAGAAGGTGACCATCAGTGACTGTGGTGAGCTTCCAAGTGCTTGA 732 0.4658 MSMAAAFTTATATPRLSNVGETKALNRNPNSNLKLVRGFGFGGCSVSVKGATRGSRSVRVVASSSLEASVQSKVTQKVYFDISIGNPVGKLAGRIVIGLYGDDVPQTAENFRALCTGEKGFGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLSHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGMDIVRLIESQETDRGDRPRKKVTISDCGELPSA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02912 243 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 5, CHLOROPLASTIC 55 240 - -
Cca02g02912 243 MobiDBLite consensus disorder prediction 221 243 - -
Cca02g02912 243 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 123 140 IPR020892 GO:0003755|GO:0006457
Cca02g02912 243 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 89 239 IPR002130 GO:0000413|GO:0003755
Cca02g02912 243 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 90 238 IPR002130 GO:0000413|GO:0003755
Cca02g02912 243 CDD cyclophilin_ABH_like 77 238 - -
Cca02g02912 243 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 55 240 - -
Cca02g02912 243 Gene3D - 65 243 IPR029000 -
Cca02g02912 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 99 114 IPR002130 GO:0000413|GO:0003755
Cca02g02912 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 128 140 IPR002130 GO:0000413|GO:0003755
Cca02g02912 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 171 186 IPR002130 GO:0000413|GO:0003755
Cca02g02912 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 186 198 IPR002130 GO:0000413|GO:0003755
Cca02g02912 243 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 199 214 IPR002130 GO:0000413|GO:0003755
Cca02g02912 243 SUPERFAMILY Cyclophilin-like 69 240 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02912 Cca-Chr2 50621540 50624153 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02912 55 234 U-box Gene Family AT5G67530 43.386 3.88e-36 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02912 K03768 - gmx:100777088 375.941