Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca02g02902 ATGTACCcctcctcctcttcctcctcttcctcttcttctgccCAATCCATGAGCCAGGGGCTCACCCGCTACGGCTCGGCGCCGGGCTCTCTGCTCACCAGCACGGTCGAGGCCGTCATAGGAGGAGGAGGAGGATCGCGCCCCTACTATTCCGGAGACTCTTCCGAGTCAACCTGCAAGGAGCAGAGGTCCTACGACGCCCACGCCCACTCTTACGGATCCGGATCCGCCTTGCTCCGCCAGAAAAGCTCCCCCGCCGGCTTCCTCTCCCATCTGGccgccaccgccaccgccaccaccacccccaaccacatccacAGCGGCTTCACCATCACGCGCCCTTCCCAATTGAGCTTCACGCCTCACTGCCAGGACTCGGAAAATAGTGCGACCACCAGCTTCGGAATTGGAATGGAGGCGTGGGACAATTCCATCGCCTTTTCCGCTCCCCCAACTAAGCGCTCCAAAACCACCAACGATCCCGACATTCTGCATTGCCTCAACGCCTTGGAATCTCAGTTTAGTCTGCCCCAAACGAGCCTCGAAATGGCAACCGTCGAGAATATGTTGCGTATTCCCGAAGATTCCGTCCCTTGTAAAATCCGTGCTAAGCGAGGTTGCGCTACTCATCCGCGTAGCATTGCAGAGCGGGAGAGAAGAACAAGAATAAGTGGCAAGCTCAAGAAATTACAGGACCTTGTACCTAACATGGATAAGCAAACAAGCTATGCAGACATGCTGGATTTGGCCGTTCAACATATCAAAGGTCTTCAAACTCAAGTTCAGAAGCTTCACAAAGAACTTGAGACTTGCACTTGCGGATGCAAACAAAGCAAATAA 840 0.4917 MYPSSSSSSSSSSAQSMSQGLTRYGSAPGSLLTSTVEAVIGGGGGSRPYYSGDSSESTCKEQRSYDAHAHSYGSGSALLRQKSSPAGFLSHLAATATATTTPNHIHSGFTITRPSQLSFTPHCQDSENSATTSFGIGMEAWDNSIAFSAPPTKRSKTTNDPDILHCLNALESQFSLPQTSLEMATVENMLRIPEDSVPCKIRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQTQVQKLHKELETCTCGCKQSK 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca02g02902 279 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 20 272 - -
Cca02g02902 279 MobiDBLite consensus disorder prediction 43 63 - -
Cca02g02902 279 Gene3D - 208 278 IPR036638 GO:0046983
Cca02g02902 279 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 273 IPR036638 GO:0046983
Cca02g02902 279 CDD bHLH_AtbHLH_like 212 264 IPR045239 -
Cca02g02902 279 SMART finulus 213 263 IPR011598 GO:0046983
Cca02g02902 279 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 207 257 IPR011598 GO:0046983
Cca02g02902 279 PANTHER TRANSCRIPTION FACTOR BHLH129 20 272 - -
Cca02g02902 279 Pfam Helix-loop-helix DNA-binding domain 212 258 IPR011598 GO:0046983
Cca02g02902 279 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca02g02902 Cca-Chr2 50474981 50480557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca02g02902 20 277 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 42.075 2.16e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca02g02902 HLH 3.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca02g02902 - - var:108325944 386.341